Strain Fitness in Dechlorosoma suillum PS around Dsui_1339

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1336 and Dsui_1337 are separated by 237 nucleotidesDsui_1337 and Dsui_1338 are separated by 14 nucleotidesDsui_1338 and Dsui_1339 are separated by 228 nucleotidesDsui_1339 and Dsui_1340 are separated by 101 nucleotidesDsui_1340 and Dsui_1341 are separated by 24 nucleotidesDsui_1341 and Dsui_1342 are separated by 44 nucleotides Dsui_1336: Dsui_1336 - 16S ribosomal RNA, at 1,393,554 to 1,394,975 _1336 Dsui_1337: Dsui_1337 - tRNA-Ile, at 1,395,213 to 1,395,289 _1337 Dsui_1338: Dsui_1338 - tRNA-Ala, at 1,395,304 to 1,395,379 _1338 Dsui_1339: Dsui_1339 - 23S ribosomal RNA, at 1,395,608 to 1,398,489 _1339 Dsui_1340: Dsui_1340 - 5S ribosomal RNA, at 1,398,591 to 1,398,704 _1340 Dsui_1341: Dsui_1341 - methionine-S-sulfoxide reductase, at 1,398,729 to 1,399,430 _1341 Dsui_1342: Dsui_1342 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,399,475 to 1,399,819 _1342 Position (kb) 1395 1396 1397 1398 1399Strain fitness (log2 ratio) -1 0 1at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.818 kb on + strand, within Dsui_1341at 1398.849 kb on + strand, within Dsui_1341at 1398.870 kb on - strand, within Dsui_1341at 1398.885 kb on + strand, within Dsui_1341at 1398.903 kb on - strand, within Dsui_1341at 1398.918 kb on - strand, within Dsui_1341at 1398.960 kb on + strand, within Dsui_1341at 1399.000 kb on - strand, within Dsui_1341at 1399.010 kb on - strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.063 kb on - strand, within Dsui_1341at 1399.069 kb on - strand, within Dsui_1341at 1399.129 kb on + strand, within Dsui_1341at 1399.129 kb on + strand, within Dsui_1341at 1399.136 kb on + strand, within Dsui_1341at 1399.136 kb on + strand, within Dsui_1341at 1399.137 kb on - strand, within Dsui_1341at 1399.144 kb on - strand, within Dsui_1341at 1399.158 kb on + strand, within Dsui_1341at 1399.166 kb on - strand, within Dsui_1341at 1399.181 kb on - strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.227 kb on + strand, within Dsui_1341at 1399.240 kb on - strand, within Dsui_1341at 1399.244 kb on + strand, within Dsui_1341at 1399.301 kb on + strand, within Dsui_1341at 1399.307 kb on + strand, within Dsui_1341at 1399.347 kb on + strand, within Dsui_1341at 1399.354 kb on + strand, within Dsui_1341at 1399.365 kb on - strandat 1399.390 kb on + strandat 1399.415 kb on + strandat 1399.477 kb on - strandat 1399.482 kb on - strandat 1399.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,398,805 + Dsui_1341 0.11 -0.1
1,398,805 + Dsui_1341 0.11 -0.3
1,398,805 + Dsui_1341 0.11 -0.5
1,398,805 + Dsui_1341 0.11 -0.4
1,398,818 + Dsui_1341 0.13 -0.5
1,398,849 + Dsui_1341 0.17 -0.5
1,398,870 - Dsui_1341 0.20 -1.3
1,398,885 + Dsui_1341 0.22 -0.0
1,398,903 - Dsui_1341 0.25 -0.6
1,398,918 - Dsui_1341 0.27 -0.4
1,398,960 + Dsui_1341 0.33 +0.0
1,399,000 - Dsui_1341 0.39 -0.5
1,399,010 - Dsui_1341 0.40 -0.2
1,399,055 + Dsui_1341 0.46 -0.1
1,399,055 + Dsui_1341 0.46 -1.2
1,399,055 + Dsui_1341 0.46 -0.7
1,399,063 - Dsui_1341 0.48 -0.4
1,399,069 - Dsui_1341 0.48 -1.1
1,399,129 + Dsui_1341 0.57 -0.6
1,399,129 + Dsui_1341 0.57 -0.7
1,399,136 + Dsui_1341 0.58 -0.7
1,399,136 + Dsui_1341 0.58 -0.3
1,399,137 - Dsui_1341 0.58 +0.6
1,399,144 - Dsui_1341 0.59 -1.1
1,399,158 + Dsui_1341 0.61 -0.8
1,399,166 - Dsui_1341 0.62 -1.0
1,399,181 - Dsui_1341 0.64 +0.6
1,399,188 + Dsui_1341 0.65 -0.7
1,399,188 + Dsui_1341 0.65 -0.3
1,399,188 + Dsui_1341 0.65 -0.1
1,399,227 + Dsui_1341 0.71 -0.5
1,399,240 - Dsui_1341 0.73 -1.4
1,399,244 + Dsui_1341 0.73 -0.3
1,399,301 + Dsui_1341 0.81 -0.5
1,399,307 + Dsui_1341 0.82 -0.4
1,399,347 + Dsui_1341 0.88 -0.3
1,399,354 + Dsui_1341 0.89 -0.8
1,399,365 - +1.6
1,399,390 + -0.4
1,399,415 + -0.5
1,399,477 - -1.3
1,399,482 - -0.4
1,399,487 - -1.0

Or see this region's nucleotide sequence