Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1277 and Dsui_1278 are separated by 12 nucleotides Dsui_1278 and Dsui_1279 are separated by 88 nucleotides
Dsui_1277: Dsui_1277 - glycerol-3-phosphate dehydrogenase, at 1,338,290 to 1,339,285
_1277
Dsui_1278: Dsui_1278 - putative rRNA methylase SpoU family, at 1,339,298 to 1,339,762
_1278
Dsui_1279: Dsui_1279 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,339,851 to 1,341,557
_1279
Position (kb)
1339
1340 Strain fitness (log2 ratio)
-2
-1
0
1 at 1339.264 kb on + strand at 1339.333 kb on + strand at 1339.510 kb on - strand, within Dsui_1278 at 1339.510 kb on - strand, within Dsui_1278 at 1339.594 kb on - strand, within Dsui_1278 at 1339.655 kb on + strand, within Dsui_1278 at 1339.662 kb on + strand, within Dsui_1278 at 1339.689 kb on + strand, within Dsui_1278 at 1339.689 kb on + strand, within Dsui_1278 at 1339.695 kb on + strand, within Dsui_1278 at 1339.702 kb on + strand, within Dsui_1278 at 1339.729 kb on - strand at 1339.731 kb on + strand at 1339.742 kb on + strand at 1339.749 kb on - strand at 1339.899 kb on + strand at 1339.902 kb on + strand at 1339.902 kb on - strand at 1339.912 kb on + strand at 1339.915 kb on - strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.927 kb on - strand at 1339.936 kb on - strand at 1339.994 kb on - strand at 1340.099 kb on + strand, within Dsui_1279 at 1340.173 kb on + strand, within Dsui_1279 at 1340.249 kb on - strand, within Dsui_1279 at 1340.366 kb on - strand, within Dsui_1279 at 1340.413 kb on - strand, within Dsui_1279 at 1340.443 kb on + strand, within Dsui_1279 at 1340.514 kb on + strand, within Dsui_1279 at 1340.519 kb on + strand, within Dsui_1279 at 1340.555 kb on - strand, within Dsui_1279 at 1340.577 kb on + strand, within Dsui_1279 at 1340.617 kb on - strand, within Dsui_1279 at 1340.631 kb on - strand, within Dsui_1279 at 1340.730 kb on + strand, within Dsui_1279 at 1340.760 kb on + strand, within Dsui_1279
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,339,264 + -0.8 1,339,333 + -0.2 1,339,510 - Dsui_1278 0.46 -0.9 1,339,510 - Dsui_1278 0.46 -1.3 1,339,594 - Dsui_1278 0.64 -0.5 1,339,655 + Dsui_1278 0.77 -1.5 1,339,662 + Dsui_1278 0.78 +1.6 1,339,689 + Dsui_1278 0.84 +0.3 1,339,689 + Dsui_1278 0.84 -0.4 1,339,695 + Dsui_1278 0.85 -1.4 1,339,702 + Dsui_1278 0.87 -1.7 1,339,729 - -0.9 1,339,731 + -2.2 1,339,742 + -0.6 1,339,749 - -2.1 1,339,899 + -0.2 1,339,902 + -0.8 1,339,902 - -0.4 1,339,912 + -0.3 1,339,915 - +0.6 1,339,919 + -0.2 1,339,919 + -0.6 1,339,919 + -0.8 1,339,919 + -0.2 1,339,927 - +0.6 1,339,936 - +0.6 1,339,994 - +0.6 1,340,099 + Dsui_1279 0.15 -0.4 1,340,173 + Dsui_1279 0.19 -0.5 1,340,249 - Dsui_1279 0.23 +0.6 1,340,366 - Dsui_1279 0.30 -1.7 1,340,413 - Dsui_1279 0.33 +0.6 1,340,443 + Dsui_1279 0.35 -0.6 1,340,514 + Dsui_1279 0.39 -0.4 1,340,519 + Dsui_1279 0.39 -0.2 1,340,555 - Dsui_1279 0.41 +0.6 1,340,577 + Dsui_1279 0.43 -0.0 1,340,617 - Dsui_1279 0.45 -1.4 1,340,631 - Dsui_1279 0.46 +0.6 1,340,730 + Dsui_1279 0.51 -0.7 1,340,760 + Dsui_1279 0.53 -0.7
Or see this region's nucleotide sequence