Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1250 and Dsui_1251 overlap by 8 nucleotides Dsui_1251 and Dsui_1252 are separated by 12 nucleotides Dsui_1252 and Dsui_1253 are separated by 120 nucleotides Dsui_1253 and Dsui_1254 are separated by 186 nucleotides
Dsui_1250: Dsui_1250 - sulfate permease-like transporter, MFS superfamily, at 1,312,264 to 1,313,931
_1250
Dsui_1251: Dsui_1251 - acylphosphatase, at 1,313,924 to 1,314,211
_1251
Dsui_1252: Dsui_1252 - hypothetical protein, at 1,314,224 to 1,314,817
_1252
Dsui_1253: Dsui_1253 - peroxiredoxin, at 1,314,938 to 1,315,537
_1253
Dsui_1254: Dsui_1254 - TonB-dependent copper receptor, at 1,315,724 to 1,317,742
_1254
Position (kb)
1314
1315 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1313.265 kb on - strand, within Dsui_1250 at 1313.266 kb on - strand, within Dsui_1250 at 1313.272 kb on - strand, within Dsui_1250 at 1313.274 kb on + strand, within Dsui_1250 at 1313.485 kb on + strand, within Dsui_1250 at 1313.487 kb on - strand, within Dsui_1250 at 1313.493 kb on - strand, within Dsui_1250 at 1313.516 kb on + strand at 1313.516 kb on + strand, within Dsui_1250 at 1313.524 kb on - strand, within Dsui_1250 at 1313.539 kb on + strand, within Dsui_1250 at 1313.539 kb on + strand, within Dsui_1250 at 1313.547 kb on - strand at 1313.625 kb on + strand, within Dsui_1250 at 1313.672 kb on + strand, within Dsui_1250 at 1313.672 kb on + strand, within Dsui_1250 at 1313.720 kb on + strand, within Dsui_1250 at 1313.747 kb on - strand, within Dsui_1250 at 1313.958 kb on + strand, within Dsui_1251 at 1314.002 kb on + strand, within Dsui_1251 at 1314.010 kb on - strand, within Dsui_1251 at 1314.067 kb on - strand at 1314.186 kb on + strand at 1314.196 kb on + strand at 1314.206 kb on - strand at 1314.260 kb on + strand at 1314.339 kb on - strand, within Dsui_1252 at 1314.371 kb on + strand, within Dsui_1252 at 1314.371 kb on + strand, within Dsui_1252 at 1314.376 kb on - strand at 1314.384 kb on - strand, within Dsui_1252 at 1314.443 kb on - strand, within Dsui_1252 at 1314.458 kb on - strand at 1314.551 kb on + strand, within Dsui_1252 at 1314.559 kb on - strand, within Dsui_1252 at 1314.598 kb on + strand, within Dsui_1252 at 1314.685 kb on - strand at 1314.803 kb on - strand at 1314.837 kb on - strand at 1314.954 kb on + strand at 1314.954 kb on + strand at 1314.964 kb on - strand at 1315.038 kb on - strand, within Dsui_1253 at 1315.038 kb on - strand, within Dsui_1253 at 1315.038 kb on - strand, within Dsui_1253 at 1315.038 kb on - strand at 1315.089 kb on + strand, within Dsui_1253 at 1315.104 kb on + strand, within Dsui_1253 at 1315.148 kb on + strand, within Dsui_1253 at 1315.148 kb on + strand, within Dsui_1253 at 1315.148 kb on + strand, within Dsui_1253 at 1315.156 kb on - strand at 1315.156 kb on - strand, within Dsui_1253 at 1315.156 kb on - strand at 1315.158 kb on + strand, within Dsui_1253 at 1315.166 kb on - strand, within Dsui_1253 at 1315.233 kb on + strand, within Dsui_1253 at 1315.240 kb on + strand, within Dsui_1253 at 1315.366 kb on - strand, within Dsui_1253 at 1315.719 kb on + strand at 1315.737 kb on - strand at 1315.737 kb on - strand at 1315.737 kb on - strand at 1315.751 kb on - strand at 1315.801 kb on - strand at 1315.810 kb on - strand at 1315.812 kb on + strand at 1315.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,313,265 - Dsui_1250 0.60 -1.0 1,313,266 - Dsui_1250 0.60 -2.7 1,313,272 - Dsui_1250 0.60 -1.4 1,313,274 + Dsui_1250 0.61 -0.4 1,313,485 + Dsui_1250 0.73 -0.3 1,313,487 - Dsui_1250 0.73 -1.4 1,313,493 - Dsui_1250 0.74 +0.6 1,313,516 + +0.6 1,313,516 + Dsui_1250 0.75 -1.3 1,313,524 - Dsui_1250 0.76 -1.0 1,313,539 + Dsui_1250 0.76 -0.7 1,313,539 + Dsui_1250 0.76 -0.2 1,313,547 - +0.6 1,313,625 + Dsui_1250 0.82 -0.3 1,313,672 + Dsui_1250 0.84 -0.1 1,313,672 + Dsui_1250 0.84 +0.6 1,313,720 + Dsui_1250 0.87 -0.3 1,313,747 - Dsui_1250 0.89 -1.4 1,313,958 + Dsui_1251 0.12 -0.4 1,314,002 + Dsui_1251 0.27 -0.8 1,314,010 - Dsui_1251 0.30 -0.4 1,314,067 - +0.6 1,314,186 + -1.4 1,314,196 + -2.0 1,314,206 - +0.6 1,314,260 + -0.2 1,314,339 - Dsui_1252 0.19 -1.7 1,314,371 + Dsui_1252 0.25 -0.8 1,314,371 + Dsui_1252 0.25 -0.3 1,314,376 - +0.6 1,314,384 - Dsui_1252 0.27 -1.4 1,314,443 - Dsui_1252 0.37 -1.7 1,314,458 - +0.6 1,314,551 + Dsui_1252 0.55 +0.6 1,314,559 - Dsui_1252 0.56 -1.7 1,314,598 + Dsui_1252 0.63 -0.7 1,314,685 - +0.6 1,314,803 - +0.6 1,314,837 - -1.0 1,314,954 + -0.7 1,314,954 + -0.7 1,314,964 - +0.6 1,315,038 - Dsui_1253 0.17 +0.6 1,315,038 - Dsui_1253 0.17 -1.0 1,315,038 - Dsui_1253 0.17 -1.4 1,315,038 - +0.6 1,315,089 + Dsui_1253 0.25 -0.5 1,315,104 + Dsui_1253 0.28 -0.1 1,315,148 + Dsui_1253 0.35 -0.3 1,315,148 + Dsui_1253 0.35 -0.4 1,315,148 + Dsui_1253 0.35 -1.0 1,315,156 - +0.6 1,315,156 - Dsui_1253 0.36 -1.0 1,315,156 - +0.6 1,315,158 + Dsui_1253 0.37 -0.3 1,315,166 - Dsui_1253 0.38 -1.7 1,315,233 + Dsui_1253 0.49 -0.5 1,315,240 + Dsui_1253 0.50 -1.1 1,315,366 - Dsui_1253 0.71 -0.4 1,315,719 + -3.0 1,315,737 - -1.0 1,315,737 - -0.4 1,315,737 - -2.6 1,315,751 - +0.6 1,315,801 - +0.6 1,315,810 - +0.6 1,315,812 + -1.0 1,315,816 + -0.4
Or see this region's nucleotide sequence