Strain Fitness in Dechlorosoma suillum PS around Dsui_1242

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1240 and Dsui_1241 are separated by 13 nucleotidesDsui_1241 and Dsui_1242 overlap by 4 nucleotidesDsui_1242 and Dsui_1243 are separated by 28 nucleotides Dsui_1240: Dsui_1240 - dihydrofolate reductase, at 1,299,101 to 1,299,634 _1240 Dsui_1241: Dsui_1241 - hypothetical protein, at 1,299,648 to 1,300,391 _1241 Dsui_1242: Dsui_1242 - hypothetical protein, at 1,300,388 to 1,302,562 _1242 Dsui_1243: Dsui_1243 - hypothetical protein, at 1,302,591 to 1,303,937 _1243 Position (kb) 1300 1301 1302 1303Strain fitness (log2 ratio) -2 -1 0 1at 1300.003 kb on + strandat 1300.003 kb on + strandat 1300.015 kb on + strandat 1300.096 kb on - strand, within Dsui_1241at 1300.123 kb on + strand, within Dsui_1241at 1300.181 kb on - strandat 1300.552 kb on - strandat 1300.563 kb on + strandat 1300.615 kb on + strand, within Dsui_1242at 1300.649 kb on - strand, within Dsui_1242at 1300.658 kb on + strandat 1300.785 kb on + strandat 1300.956 kb on + strand, within Dsui_1242at 1300.968 kb on + strand, within Dsui_1242at 1300.968 kb on + strand, within Dsui_1242at 1300.968 kb on + strandat 1301.097 kb on - strand, within Dsui_1242at 1301.127 kb on - strand, within Dsui_1242at 1301.180 kb on + strandat 1301.273 kb on + strandat 1301.282 kb on + strandat 1301.297 kb on + strandat 1301.418 kb on - strandat 1301.469 kb on + strand, within Dsui_1242at 1301.798 kb on + strandat 1301.806 kb on - strand, within Dsui_1242at 1301.821 kb on + strandat 1301.844 kb on - strand, within Dsui_1242at 1301.890 kb on - strandat 1301.900 kb on - strandat 1301.934 kb on - strand, within Dsui_1242at 1301.934 kb on - strandat 1302.039 kb on + strandat 1302.047 kb on - strand, within Dsui_1242at 1302.097 kb on - strand, within Dsui_1242at 1302.195 kb on + strandat 1302.292 kb on + strandat 1302.348 kb on + strandat 1302.407 kb on - strandat 1302.435 kb on - strandat 1302.552 kb on - strandat 1302.637 kb on - strandat 1302.663 kb on + strandat 1302.934 kb on - strand, within Dsui_1243at 1303.104 kb on - strand, within Dsui_1243at 1303.109 kb on - strand, within Dsui_1243at 1303.109 kb on - strand, within Dsui_1243at 1303.111 kb on + strand, within Dsui_1243at 1303.119 kb on - strand, within Dsui_1243at 1303.119 kb on - strand, within Dsui_1243at 1303.192 kb on + strandat 1303.200 kb on - strand, within Dsui_1243at 1303.230 kb on + strand, within Dsui_1243at 1303.335 kb on - strand, within Dsui_1243at 1303.376 kb on + strand, within Dsui_1243at 1303.411 kb on + strandat 1303.543 kb on - strand, within Dsui_1243

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,300,003 + +0.6
1,300,003 + -0.4
1,300,015 + -1.0
1,300,096 - Dsui_1241 0.60 +0.6
1,300,123 + Dsui_1241 0.64 -0.4
1,300,181 - +0.6
1,300,552 - -1.0
1,300,563 + +0.6
1,300,615 + Dsui_1242 0.10 -2.0
1,300,649 - Dsui_1242 0.12 -1.4
1,300,658 + +0.6
1,300,785 + +0.6
1,300,956 + Dsui_1242 0.26 -2.2
1,300,968 + Dsui_1242 0.27 -1.0
1,300,968 + Dsui_1242 0.27 -1.0
1,300,968 + -0.4
1,301,097 - Dsui_1242 0.33 -1.4
1,301,127 - Dsui_1242 0.34 -2.0
1,301,180 + +0.6
1,301,273 + -0.4
1,301,282 + -0.4
1,301,297 + +0.6
1,301,418 - +0.6
1,301,469 + Dsui_1242 0.50 -2.0
1,301,798 + -1.0
1,301,806 - Dsui_1242 0.65 -1.4
1,301,821 + -0.4
1,301,844 - Dsui_1242 0.67 -0.4
1,301,890 - -0.4
1,301,900 - +0.6
1,301,934 - Dsui_1242 0.71 -1.4
1,301,934 - -0.4
1,302,039 + -0.4
1,302,047 - Dsui_1242 0.76 -2.0
1,302,097 - Dsui_1242 0.79 -0.4
1,302,195 + -1.4
1,302,292 + +0.6
1,302,348 + +0.6
1,302,407 - -1.8
1,302,435 - -1.7
1,302,552 - -0.4
1,302,637 - -1.2
1,302,663 + -0.2
1,302,934 - Dsui_1243 0.25 -0.6
1,303,104 - Dsui_1243 0.38 -0.8
1,303,109 - Dsui_1243 0.38 -2.0
1,303,109 - Dsui_1243 0.38 -1.4
1,303,111 + Dsui_1243 0.39 +1.6
1,303,119 - Dsui_1243 0.39 -0.9
1,303,119 - Dsui_1243 0.39 -1.7
1,303,192 + +0.6
1,303,200 - Dsui_1243 0.45 -0.3
1,303,230 + Dsui_1243 0.47 -1.0
1,303,335 - Dsui_1243 0.55 -1.6
1,303,376 + Dsui_1243 0.58 +0.6
1,303,411 + +0.6
1,303,543 - Dsui_1243 0.71 -0.3

Or see this region's nucleotide sequence