Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1137 and Dsui_1138 overlap by 4 nucleotides Dsui_1138 and Dsui_1139 overlap by 4 nucleotides Dsui_1139 and Dsui_1140 overlap by 4 nucleotides
Dsui_1137: Dsui_1137 - chromate transporter, chromate ion transporter family, at 1,190,260 to 1,191,624
_1137
Dsui_1138: Dsui_1138 - hypothetical protein, at 1,191,621 to 1,192,016
_1138
Dsui_1139: Dsui_1139 - hypothetical protein, at 1,192,013 to 1,192,468
_1139
Dsui_1140: Dsui_1140 - arabinose efflux permease family protein, at 1,192,465 to 1,193,676
_1140
Position (kb)
1191
1192
1193 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1190.623 kb on + strand, within Dsui_1137 at 1190.654 kb on - strand, within Dsui_1137 at 1190.858 kb on - strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.040 kb on - strand, within Dsui_1137 at 1191.111 kb on - strand, within Dsui_1137 at 1191.202 kb on - strand, within Dsui_1137 at 1191.246 kb on + strand, within Dsui_1137 at 1191.267 kb on + strand, within Dsui_1137 at 1191.287 kb on + strand, within Dsui_1137 at 1191.332 kb on + strand, within Dsui_1137 at 1191.382 kb on + strand, within Dsui_1137 at 1191.431 kb on + strand, within Dsui_1137 at 1191.431 kb on + strand, within Dsui_1137 at 1191.439 kb on - strand, within Dsui_1137 at 1191.461 kb on - strand, within Dsui_1137 at 1191.524 kb on + strand at 1191.531 kb on - strand at 1191.541 kb on + strand at 1191.543 kb on - strand at 1191.657 kb on - strand at 1191.739 kb on - strand, within Dsui_1138 at 1191.741 kb on - strand at 1191.743 kb on + strand, within Dsui_1138 at 1191.773 kb on - strand, within Dsui_1138 at 1191.793 kb on + strand, within Dsui_1138 at 1191.796 kb on + strand, within Dsui_1138 at 1191.804 kb on - strand, within Dsui_1138 at 1191.856 kb on - strand, within Dsui_1138 at 1191.927 kb on - strand, within Dsui_1138 at 1191.960 kb on - strand, within Dsui_1138 at 1191.973 kb on + strand, within Dsui_1138 at 1192.026 kb on + strand at 1192.173 kb on + strand, within Dsui_1139 at 1192.174 kb on - strand, within Dsui_1139 at 1192.182 kb on - strand, within Dsui_1139 at 1192.206 kb on + strand, within Dsui_1139 at 1192.236 kb on - strand, within Dsui_1139 at 1192.241 kb on - strand, within Dsui_1139 at 1192.252 kb on + strand, within Dsui_1139 at 1192.327 kb on - strand, within Dsui_1139 at 1192.406 kb on + strand, within Dsui_1139 at 1192.450 kb on + strand at 1192.501 kb on - strand at 1192.704 kb on + strand, within Dsui_1140 at 1192.712 kb on + strand, within Dsui_1140 at 1192.779 kb on - strand, within Dsui_1140 at 1192.799 kb on + strand, within Dsui_1140 at 1192.952 kb on - strand, within Dsui_1140 at 1192.952 kb on - strand, within Dsui_1140 at 1192.952 kb on - strand, within Dsui_1140
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,190,623 + Dsui_1137 0.27 -1.4 1,190,654 - Dsui_1137 0.29 -1.4 1,190,858 - Dsui_1137 0.44 -2.2 1,191,032 + Dsui_1137 0.57 -0.7 1,191,032 + Dsui_1137 0.57 -1.3 1,191,032 + Dsui_1137 0.57 +2.2 1,191,032 + Dsui_1137 0.57 -0.6 1,191,032 + Dsui_1137 0.57 -2.7 1,191,040 - Dsui_1137 0.57 +0.6 1,191,111 - Dsui_1137 0.62 -0.4 1,191,202 - Dsui_1137 0.69 -1.0 1,191,246 + Dsui_1137 0.72 +0.0 1,191,267 + Dsui_1137 0.74 -1.0 1,191,287 + Dsui_1137 0.75 -1.0 1,191,332 + Dsui_1137 0.79 -0.4 1,191,382 + Dsui_1137 0.82 +0.6 1,191,431 + Dsui_1137 0.86 -0.4 1,191,431 + Dsui_1137 0.86 -2.2 1,191,439 - Dsui_1137 0.86 -0.4 1,191,461 - Dsui_1137 0.88 -0.4 1,191,524 + +0.6 1,191,531 - +0.6 1,191,541 + -1.1 1,191,543 - +0.6 1,191,657 - +0.6 1,191,739 - Dsui_1138 0.30 -1.0 1,191,741 - +0.6 1,191,743 + Dsui_1138 0.31 -0.4 1,191,773 - Dsui_1138 0.38 +0.6 1,191,793 + Dsui_1138 0.43 +0.6 1,191,796 + Dsui_1138 0.44 +0.6 1,191,804 - Dsui_1138 0.46 +0.6 1,191,856 - Dsui_1138 0.59 -0.4 1,191,927 - Dsui_1138 0.77 +0.6 1,191,960 - Dsui_1138 0.86 -1.0 1,191,973 + Dsui_1138 0.89 +0.6 1,192,026 + +0.6 1,192,173 + Dsui_1139 0.35 +0.6 1,192,174 - Dsui_1139 0.35 +0.6 1,192,182 - Dsui_1139 0.37 +0.6 1,192,206 + Dsui_1139 0.42 -0.4 1,192,236 - Dsui_1139 0.49 -0.4 1,192,241 - Dsui_1139 0.50 +0.6 1,192,252 + Dsui_1139 0.52 -0.4 1,192,327 - Dsui_1139 0.69 +0.6 1,192,406 + Dsui_1139 0.86 -2.0 1,192,450 + -1.4 1,192,501 - -0.4 1,192,704 + Dsui_1140 0.20 -0.4 1,192,712 + Dsui_1140 0.20 -0.4 1,192,779 - Dsui_1140 0.26 -2.0 1,192,799 + Dsui_1140 0.28 +0.3 1,192,952 - Dsui_1140 0.40 -2.2 1,192,952 - Dsui_1140 0.40 -1.7 1,192,952 - Dsui_1140 0.40 +0.6
Or see this region's nucleotide sequence