Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1106 and Dsui_1107 are separated by 38 nucleotides Dsui_1107 and Dsui_1108 are separated by 254 nucleotides Dsui_1108 and Dsui_1109 are separated by 18 nucleotides Dsui_1109 and Dsui_1110 are separated by 15 nucleotides
Dsui_1106: Dsui_1106 - nitroreductase, at 1,152,290 to 1,152,982
_1106
Dsui_1107: Dsui_1107 - cAMP-binding protein, at 1,153,021 to 1,153,695
_1107
Dsui_1108: Dsui_1108 - AMP-forming long-chain acyl-CoA synthetase, at 1,153,950 to 1,155,929
_1108
Dsui_1109: Dsui_1109 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,155,948 to 1,156,748
_1109
Dsui_1110: Dsui_1110 - branched-chain amino acid ABC-type transport system, permease component, at 1,156,764 to 1,157,657
_1110
Position (kb)
1153
1154
1155
1156 Strain fitness (log2 ratio)
-2
-1
0
1 at 1153.088 kb on + strand at 1153.122 kb on - strand, within Dsui_1107 at 1153.234 kb on + strand, within Dsui_1107 at 1153.290 kb on + strand, within Dsui_1107 at 1153.335 kb on - strand, within Dsui_1107 at 1153.553 kb on + strand, within Dsui_1107 at 1153.674 kb on - strand at 1153.803 kb on + strand at 1153.807 kb on - strand at 1153.807 kb on - strand at 1153.984 kb on + strand at 1153.984 kb on + strand at 1154.036 kb on + strand at 1154.088 kb on + strand at 1154.096 kb on - strand at 1154.231 kb on - strand, within Dsui_1108 at 1154.251 kb on + strand, within Dsui_1108 at 1154.332 kb on + strand, within Dsui_1108 at 1154.539 kb on + strand, within Dsui_1108 at 1154.539 kb on + strand, within Dsui_1108 at 1154.573 kb on + strand, within Dsui_1108 at 1154.573 kb on + strand, within Dsui_1108 at 1154.581 kb on - strand, within Dsui_1108 at 1154.676 kb on + strand, within Dsui_1108 at 1154.804 kb on - strand, within Dsui_1108 at 1154.910 kb on + strand, within Dsui_1108 at 1154.977 kb on - strand, within Dsui_1108 at 1154.977 kb on - strand, within Dsui_1108 at 1155.067 kb on + strand, within Dsui_1108 at 1155.067 kb on + strand, within Dsui_1108 at 1155.075 kb on - strand, within Dsui_1108 at 1155.085 kb on - strand, within Dsui_1108 at 1155.129 kb on + strand, within Dsui_1108 at 1155.212 kb on + strand, within Dsui_1108 at 1155.314 kb on + strand, within Dsui_1108 at 1155.362 kb on + strand, within Dsui_1108 at 1155.380 kb on + strand, within Dsui_1108 at 1155.443 kb on + strand, within Dsui_1108 at 1155.490 kb on + strand, within Dsui_1108 at 1155.500 kb on + strand, within Dsui_1108 at 1155.508 kb on - strand, within Dsui_1108 at 1155.724 kb on + strand, within Dsui_1108 at 1155.791 kb on - strand at 1155.814 kb on + strand at 1155.904 kb on + strand at 1155.924 kb on + strand at 1155.937 kb on - strand at 1156.224 kb on + strand, within Dsui_1109 at 1156.258 kb on - strand, within Dsui_1109 at 1156.258 kb on - strand, within Dsui_1109 at 1156.277 kb on + strand, within Dsui_1109 at 1156.285 kb on - strand, within Dsui_1109 at 1156.285 kb on - strand, within Dsui_1109 at 1156.394 kb on - strand, within Dsui_1109 at 1156.420 kb on - strand, within Dsui_1109 at 1156.459 kb on + strand, within Dsui_1109 at 1156.502 kb on + strand, within Dsui_1109 at 1156.613 kb on + strand, within Dsui_1109 at 1156.631 kb on + strand at 1156.723 kb on + strand at 1156.730 kb on + strand at 1156.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,153,088 + +0.6 1,153,122 - Dsui_1107 0.15 -0.1 1,153,234 + Dsui_1107 0.32 +0.6 1,153,290 + Dsui_1107 0.40 -0.4 1,153,335 - Dsui_1107 0.47 -0.1 1,153,553 + Dsui_1107 0.79 +0.6 1,153,674 - +0.6 1,153,803 + +1.6 1,153,807 - -0.4 1,153,807 - +0.6 1,153,984 + -0.5 1,153,984 + -1.4 1,154,036 + -1.7 1,154,088 + +0.6 1,154,096 - -0.9 1,154,231 - Dsui_1108 0.14 -0.9 1,154,251 + Dsui_1108 0.15 -0.9 1,154,332 + Dsui_1108 0.19 -0.4 1,154,539 + Dsui_1108 0.30 +0.6 1,154,539 + Dsui_1108 0.30 -1.9 1,154,573 + Dsui_1108 0.31 +0.6 1,154,573 + Dsui_1108 0.31 -0.4 1,154,581 - Dsui_1108 0.32 -0.9 1,154,676 + Dsui_1108 0.37 -0.4 1,154,804 - Dsui_1108 0.43 +0.6 1,154,910 + Dsui_1108 0.48 -1.7 1,154,977 - Dsui_1108 0.52 -1.4 1,154,977 - Dsui_1108 0.52 -0.4 1,155,067 + Dsui_1108 0.56 +0.6 1,155,067 + Dsui_1108 0.56 +0.6 1,155,075 - Dsui_1108 0.57 +0.6 1,155,085 - Dsui_1108 0.57 +0.6 1,155,129 + Dsui_1108 0.60 +0.6 1,155,212 + Dsui_1108 0.64 -0.4 1,155,314 + Dsui_1108 0.69 -0.9 1,155,362 + Dsui_1108 0.71 +0.6 1,155,380 + Dsui_1108 0.72 +0.6 1,155,443 + Dsui_1108 0.75 -1.4 1,155,490 + Dsui_1108 0.78 +0.6 1,155,500 + Dsui_1108 0.78 +0.6 1,155,508 - Dsui_1108 0.79 -0.9 1,155,724 + Dsui_1108 0.90 -1.4 1,155,791 - +0.6 1,155,814 + -0.4 1,155,904 + -2.2 1,155,924 + +0.6 1,155,937 - +0.6 1,156,224 + Dsui_1109 0.34 +0.6 1,156,258 - Dsui_1109 0.39 +0.6 1,156,258 - Dsui_1109 0.39 +0.6 1,156,277 + Dsui_1109 0.41 -1.4 1,156,285 - Dsui_1109 0.42 -0.9 1,156,285 - Dsui_1109 0.42 +0.6 1,156,394 - Dsui_1109 0.56 +0.6 1,156,420 - Dsui_1109 0.59 -1.4 1,156,459 + Dsui_1109 0.64 +0.6 1,156,502 + Dsui_1109 0.69 +0.6 1,156,613 + Dsui_1109 0.83 +0.6 1,156,631 + +0.6 1,156,723 + -0.9 1,156,730 + +0.6 1,156,737 - +0.6
Or see this region's nucleotide sequence