Strain Fitness in Dechlorosoma suillum PS around Dsui_1090

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1089 and Dsui_1090 are separated by 355 nucleotidesDsui_1090 and Dsui_1091 are separated by 68 nucleotidesDsui_1091 and Dsui_1092 are separated by 22 nucleotides Dsui_1089: Dsui_1089 - hypothetical protein, at 1,126,937 to 1,128,418 _1089 Dsui_1090: Dsui_1090 - methyl-accepting chemotaxis protein, at 1,128,774 to 1,130,915 _1090 Dsui_1091: Dsui_1091 - protein-disulfide isomerase, at 1,130,984 to 1,131,697 _1091 Dsui_1092: Dsui_1092 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,131,720 to 1,132,877 _1092 Position (kb) 1128 1129 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1127.790 kb on + strand, within Dsui_1089at 1127.790 kb on + strand, within Dsui_1089at 1127.790 kb on + strand, within Dsui_1089at 1127.790 kb on + strand, within Dsui_1089at 1127.790 kb on + strand, within Dsui_1089at 1127.798 kb on - strand, within Dsui_1089at 1127.798 kb on - strand, within Dsui_1089at 1127.798 kb on - strand, within Dsui_1089at 1127.823 kb on + strand, within Dsui_1089at 1127.823 kb on + strand, within Dsui_1089at 1127.831 kb on - strand, within Dsui_1089at 1127.831 kb on - strand, within Dsui_1089at 1127.831 kb on - strand, within Dsui_1089at 1127.833 kb on + strand, within Dsui_1089at 1127.833 kb on + strand, within Dsui_1089at 1127.882 kb on + strand, within Dsui_1089at 1127.941 kb on - strand, within Dsui_1089at 1128.002 kb on + strand, within Dsui_1089at 1128.030 kb on + strandat 1128.035 kb on + strand, within Dsui_1089at 1128.043 kb on - strand, within Dsui_1089at 1128.043 kb on - strand, within Dsui_1089at 1128.106 kb on + strand, within Dsui_1089at 1128.111 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.124 kb on + strand, within Dsui_1089at 1128.132 kb on - strand, within Dsui_1089at 1128.132 kb on - strand, within Dsui_1089at 1128.132 kb on - strand, within Dsui_1089at 1128.136 kb on + strand, within Dsui_1089at 1128.144 kb on - strand, within Dsui_1089at 1128.144 kb on - strand, within Dsui_1089at 1128.159 kb on - strand, within Dsui_1089at 1128.205 kb on - strand, within Dsui_1089at 1128.221 kb on - strand, within Dsui_1089at 1128.235 kb on + strand, within Dsui_1089at 1128.235 kb on + strand, within Dsui_1089at 1128.235 kb on + strand, within Dsui_1089at 1128.235 kb on + strand, within Dsui_1089at 1128.235 kb on + strand, within Dsui_1089at 1128.235 kb on + strand, within Dsui_1089at 1128.243 kb on - strand, within Dsui_1089at 1128.243 kb on - strand, within Dsui_1089at 1128.243 kb on - strand, within Dsui_1089at 1128.243 kb on - strand, within Dsui_1089at 1128.270 kb on - strandat 1128.283 kb on - strandat 1128.298 kb on + strandat 1128.317 kb on + strandat 1128.322 kb on + strandat 1128.325 kb on - strandat 1128.337 kb on - strandat 1128.353 kb on + strandat 1128.361 kb on - strandat 1128.366 kb on - strandat 1128.372 kb on - strandat 1128.419 kb on + strandat 1128.419 kb on + strandat 1128.427 kb on - strandat 1128.427 kb on - strandat 1128.428 kb on + strandat 1128.441 kb on + strandat 1128.449 kb on - strandat 1128.449 kb on - strandat 1128.454 kb on - strandat 1128.456 kb on + strandat 1128.456 kb on + strandat 1128.464 kb on - strandat 1128.464 kb on - strandat 1128.504 kb on - strandat 1128.518 kb on + strandat 1128.522 kb on + strandat 1128.523 kb on + strandat 1128.524 kb on + strandat 1128.532 kb on - strandat 1128.539 kb on - strandat 1128.546 kb on - strandat 1128.559 kb on - strandat 1128.617 kb on + strandat 1128.622 kb on - strandat 1128.670 kb on + strandat 1128.728 kb on - strandat 1128.731 kb on + strandat 1128.784 kb on + strandat 1128.786 kb on + strandat 1128.795 kb on + strandat 1128.857 kb on + strandat 1128.995 kb on + strand, within Dsui_1090at 1128.995 kb on + strand, within Dsui_1090at 1129.053 kb on + strand, within Dsui_1090at 1129.062 kb on - strand, within Dsui_1090at 1129.063 kb on + strand, within Dsui_1090at 1129.071 kb on - strand, within Dsui_1090at 1129.071 kb on - strand, within Dsui_1090at 1129.106 kb on - strand, within Dsui_1090at 1129.182 kb on - strand, within Dsui_1090at 1129.189 kb on + strand, within Dsui_1090at 1129.189 kb on + strand, within Dsui_1090at 1129.197 kb on - strand, within Dsui_1090at 1129.197 kb on - strand, within Dsui_1090at 1129.197 kb on - strand, within Dsui_1090at 1129.419 kb on - strand, within Dsui_1090at 1129.419 kb on - strand, within Dsui_1090at 1129.440 kb on + strand, within Dsui_1090at 1129.448 kb on - strand, within Dsui_1090at 1129.489 kb on + strand, within Dsui_1090at 1129.489 kb on + strand, within Dsui_1090at 1129.497 kb on - strand, within Dsui_1090at 1129.514 kb on + strand, within Dsui_1090at 1129.514 kb on + strand, within Dsui_1090at 1129.522 kb on + strand, within Dsui_1090at 1129.522 kb on - strand, within Dsui_1090at 1129.578 kb on + strand, within Dsui_1090at 1129.630 kb on - strand, within Dsui_1090at 1129.690 kb on + strand, within Dsui_1090at 1129.698 kb on - strand, within Dsui_1090at 1129.741 kb on + strand, within Dsui_1090at 1129.751 kb on + strand, within Dsui_1090at 1129.760 kb on + strand, within Dsui_1090at 1129.798 kb on + strand, within Dsui_1090at 1129.798 kb on + strand, within Dsui_1090at 1129.817 kb on - strand, within Dsui_1090at 1129.943 kb on - strand, within Dsui_1090at 1129.944 kb on - strand, within Dsui_1090at 1129.984 kb on - strand, within Dsui_1090at 1129.999 kb on + strand, within Dsui_1090at 1130.009 kb on + strand, within Dsui_1090at 1130.083 kb on + strand, within Dsui_1090at 1130.083 kb on + strand, within Dsui_1090at 1130.091 kb on - strand, within Dsui_1090at 1130.146 kb on - strand, within Dsui_1090at 1130.180 kb on - strand, within Dsui_1090at 1130.192 kb on - strand, within Dsui_1090at 1130.234 kb on + strand, within Dsui_1090at 1130.270 kb on + strand, within Dsui_1090at 1130.272 kb on - strand, within Dsui_1090at 1130.302 kb on - strand, within Dsui_1090at 1130.341 kb on - strand, within Dsui_1090at 1130.601 kb on + strand, within Dsui_1090at 1130.609 kb on - strand, within Dsui_1090at 1130.672 kb on - strand, within Dsui_1090at 1130.714 kb on - strandat 1130.754 kb on - strandat 1130.845 kb on - strandat 1130.902 kb on - strandat 1130.953 kb on + strandat 1130.997 kb on - strandat 1130.997 kb on - strandat 1131.019 kb on + strandat 1131.049 kb on - strandat 1131.067 kb on + strand, within Dsui_1091at 1131.067 kb on + strand, within Dsui_1091at 1131.111 kb on - strand, within Dsui_1091at 1131.113 kb on + strand, within Dsui_1091at 1131.150 kb on + strandat 1131.177 kb on - strand, within Dsui_1091at 1131.225 kb on - strand, within Dsui_1091at 1131.260 kb on - strand, within Dsui_1091at 1131.305 kb on - strand, within Dsui_1091at 1131.366 kb on + strand, within Dsui_1091at 1131.396 kb on - strand, within Dsui_1091at 1131.467 kb on - strand, within Dsui_1091at 1131.518 kb on - strand, within Dsui_1091at 1131.520 kb on - strand, within Dsui_1091at 1131.530 kb on + strand, within Dsui_1091at 1131.580 kb on - strand, within Dsui_1091at 1131.660 kb on + strandat 1131.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,127,790 + Dsui_1089 0.58 +0.7
1,127,790 + Dsui_1089 0.58 +0.7
1,127,790 + Dsui_1089 0.58 -0.3
1,127,790 + Dsui_1089 0.58 +0.7
1,127,790 + Dsui_1089 0.58 -0.9
1,127,798 - Dsui_1089 0.58 +0.0
1,127,798 - Dsui_1089 0.58 -0.3
1,127,798 - Dsui_1089 0.58 -0.0
1,127,823 + Dsui_1089 0.60 +0.7
1,127,823 + Dsui_1089 0.60 -0.3
1,127,831 - Dsui_1089 0.60 -0.2
1,127,831 - Dsui_1089 0.60 -1.3
1,127,831 - Dsui_1089 0.60 -0.7
1,127,833 + Dsui_1089 0.60 +0.7
1,127,833 + Dsui_1089 0.60 +0.7
1,127,882 + Dsui_1089 0.64 -0.9
1,127,941 - Dsui_1089 0.68 +0.2
1,128,002 + Dsui_1089 0.72 -1.7
1,128,030 + +0.7
1,128,035 + Dsui_1089 0.74 -0.3
1,128,043 - Dsui_1089 0.75 +0.7
1,128,043 - Dsui_1089 0.75 +0.7
1,128,106 + Dsui_1089 0.79 -0.3
1,128,111 + Dsui_1089 0.79 -0.3
1,128,124 + Dsui_1089 0.80 +0.7
1,128,124 + Dsui_1089 0.80 -0.3
1,128,124 + Dsui_1089 0.80 +0.7
1,128,124 + Dsui_1089 0.80 -0.3
1,128,124 + Dsui_1089 0.80 +0.7
1,128,124 + Dsui_1089 0.80 +0.7
1,128,124 + Dsui_1089 0.80 +0.7
1,128,124 + Dsui_1089 0.80 -1.7
1,128,124 + Dsui_1089 0.80 -0.9
1,128,132 - Dsui_1089 0.81 +0.7
1,128,132 - Dsui_1089 0.81 -0.3
1,128,132 - Dsui_1089 0.81 +0.7
1,128,136 + Dsui_1089 0.81 -1.3
1,128,144 - Dsui_1089 0.81 +0.7
1,128,144 - Dsui_1089 0.81 +0.7
1,128,159 - Dsui_1089 0.82 +0.7
1,128,205 - Dsui_1089 0.86 -0.3
1,128,221 - Dsui_1089 0.87 -1.9
1,128,235 + Dsui_1089 0.88 -1.3
1,128,235 + Dsui_1089 0.88 -0.3
1,128,235 + Dsui_1089 0.88 +0.7
1,128,235 + Dsui_1089 0.88 +0.7
1,128,235 + Dsui_1089 0.88 -0.9
1,128,235 + Dsui_1089 0.88 +0.7
1,128,243 - Dsui_1089 0.88 -2.8
1,128,243 - Dsui_1089 0.88 -0.9
1,128,243 - Dsui_1089 0.88 +0.7
1,128,243 - Dsui_1089 0.88 -0.3
1,128,270 - -1.3
1,128,283 - -1.7
1,128,298 + -0.3
1,128,317 + -0.9
1,128,322 + +0.7
1,128,325 - -0.3
1,128,337 - +0.7
1,128,353 + +0.7
1,128,361 - -1.3
1,128,366 - +0.7
1,128,372 - +0.7
1,128,419 + -1.3
1,128,419 + -0.3
1,128,427 - +0.7
1,128,427 - +0.7
1,128,428 + +0.7
1,128,441 + -1.7
1,128,449 - +0.7
1,128,449 - -0.9
1,128,454 - -1.7
1,128,456 + -0.9
1,128,456 + -0.9
1,128,464 - +0.7
1,128,464 - +0.7
1,128,504 - -1.3
1,128,518 + -0.9
1,128,522 + -0.3
1,128,523 + -0.3
1,128,524 + -0.6
1,128,532 - -1.7
1,128,539 - +0.7
1,128,546 - +0.7
1,128,559 - +0.7
1,128,617 + -1.7
1,128,622 - -0.3
1,128,670 + -0.9
1,128,728 - +0.7
1,128,731 + +0.7
1,128,784 + -1.5
1,128,786 + +0.7
1,128,795 + -1.7
1,128,857 + -0.3
1,128,995 + Dsui_1090 0.10 +2.0
1,128,995 + Dsui_1090 0.10 +0.7
1,129,053 + Dsui_1090 0.13 -0.9
1,129,062 - Dsui_1090 0.13 -1.3
1,129,063 + Dsui_1090 0.13 +0.7
1,129,071 - Dsui_1090 0.14 -0.9
1,129,071 - Dsui_1090 0.14 -0.3
1,129,106 - Dsui_1090 0.15 -0.3
1,129,182 - Dsui_1090 0.19 -2.1
1,129,189 + Dsui_1090 0.19 -1.3
1,129,189 + Dsui_1090 0.19 -0.3
1,129,197 - Dsui_1090 0.20 -1.3
1,129,197 - Dsui_1090 0.20 -1.3
1,129,197 - Dsui_1090 0.20 -1.7
1,129,419 - Dsui_1090 0.30 +0.7
1,129,419 - Dsui_1090 0.30 -1.7
1,129,440 + Dsui_1090 0.31 +0.7
1,129,448 - Dsui_1090 0.31 +0.7
1,129,489 + Dsui_1090 0.33 -0.3
1,129,489 + Dsui_1090 0.33 +0.7
1,129,497 - Dsui_1090 0.34 +1.7
1,129,514 + Dsui_1090 0.35 +0.7
1,129,514 + Dsui_1090 0.35 -0.3
1,129,522 + Dsui_1090 0.35 +1.7
1,129,522 - Dsui_1090 0.35 -0.9
1,129,578 + Dsui_1090 0.38 -1.7
1,129,630 - Dsui_1090 0.40 -0.3
1,129,690 + Dsui_1090 0.43 -0.9
1,129,698 - Dsui_1090 0.43 +0.7
1,129,741 + Dsui_1090 0.45 -0.9
1,129,751 + Dsui_1090 0.46 -0.3
1,129,760 + Dsui_1090 0.46 -1.5
1,129,798 + Dsui_1090 0.48 -1.3
1,129,798 + Dsui_1090 0.48 -0.6
1,129,817 - Dsui_1090 0.49 -0.3
1,129,943 - Dsui_1090 0.55 -2.5
1,129,944 - Dsui_1090 0.55 -0.3
1,129,984 - Dsui_1090 0.56 -1.3
1,129,999 + Dsui_1090 0.57 -0.7
1,130,009 + Dsui_1090 0.58 -2.5
1,130,083 + Dsui_1090 0.61 +0.7
1,130,083 + Dsui_1090 0.61 +0.7
1,130,091 - Dsui_1090 0.61 -0.3
1,130,146 - Dsui_1090 0.64 +0.7
1,130,180 - Dsui_1090 0.66 +0.7
1,130,192 - Dsui_1090 0.66 +0.7
1,130,234 + Dsui_1090 0.68 -1.3
1,130,270 + Dsui_1090 0.70 -1.3
1,130,272 - Dsui_1090 0.70 +0.7
1,130,302 - Dsui_1090 0.71 -0.3
1,130,341 - Dsui_1090 0.73 +0.7
1,130,601 + Dsui_1090 0.85 -0.8
1,130,609 - Dsui_1090 0.86 -0.9
1,130,672 - Dsui_1090 0.89 -2.0
1,130,714 - -1.3
1,130,754 - -1.5
1,130,845 - -0.7
1,130,902 - -0.5
1,130,953 + -0.5
1,130,997 - +0.2
1,130,997 - -0.3
1,131,019 + +0.7
1,131,049 - -0.7
1,131,067 + Dsui_1091 0.12 -0.3
1,131,067 + Dsui_1091 0.12 -0.3
1,131,111 - Dsui_1091 0.18 -0.5
1,131,113 + Dsui_1091 0.18 +0.7
1,131,150 + +0.7
1,131,177 - Dsui_1091 0.27 -0.8
1,131,225 - Dsui_1091 0.34 -0.6
1,131,260 - Dsui_1091 0.39 -0.7
1,131,305 - Dsui_1091 0.45 -0.8
1,131,366 + Dsui_1091 0.54 +0.7
1,131,396 - Dsui_1091 0.58 -0.8
1,131,467 - Dsui_1091 0.68 -0.4
1,131,518 - Dsui_1091 0.75 -0.5
1,131,520 - Dsui_1091 0.75 -0.3
1,131,530 + Dsui_1091 0.76 +0.7
1,131,580 - Dsui_1091 0.83 -0.6
1,131,660 + +0.7
1,131,741 - -0.1

Or see this region's nucleotide sequence