Strain Fitness in Dechlorosoma suillum PS around Dsui_1017

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1017 and Dsui_1018 are separated by 588 nucleotidesDsui_1018 and Dsui_1019 overlap by 30 nucleotides Dsui_1017: Dsui_1017 - hypothetical protein, at 1,050,402 to 1,050,809 _1017 Dsui_1018: Dsui_1018 - hypothetical protein, at 1,051,398 to 1,051,616 _1018 Dsui_1019: Dsui_1019 - transposase, at 1,051,587 to 1,052,387 _1019 Position (kb) 1050 1051Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1049.434 kb on + strandat 1049.434 kb on - strandat 1049.472 kb on - strandat 1049.499 kb on - strandat 1049.654 kb on + strandat 1049.664 kb on - strandat 1049.674 kb on + strandat 1049.674 kb on + strandat 1049.674 kb on + strandat 1049.674 kb on + strandat 1049.674 kb on + strandat 1049.674 kb on + strandat 1049.674 kb on - strandat 1049.681 kb on + strandat 1049.682 kb on + strandat 1049.682 kb on - strandat 1049.682 kb on - strandat 1049.682 kb on - strandat 1049.702 kb on - strandat 1049.714 kb on - strandat 1049.724 kb on + strandat 1049.737 kb on + strandat 1049.750 kb on + strandat 1049.758 kb on - strandat 1049.763 kb on + strandat 1049.763 kb on + strandat 1049.783 kb on - strandat 1049.808 kb on + strandat 1049.808 kb on + strandat 1049.808 kb on + strandat 1049.809 kb on + strandat 1049.816 kb on - strandat 1049.816 kb on - strandat 1049.816 kb on - strandat 1049.818 kb on + strandat 1049.828 kb on + strandat 1049.894 kb on + strandat 1049.894 kb on + strandat 1049.899 kb on + strandat 1049.907 kb on - strandat 1049.934 kb on + strandat 1049.942 kb on - strandat 1049.958 kb on + strandat 1049.958 kb on + strandat 1049.966 kb on + strandat 1049.974 kb on - strandat 1050.033 kb on - strandat 1050.033 kb on - strandat 1050.046 kb on + strandat 1050.046 kb on + strandat 1050.046 kb on + strandat 1050.046 kb on + strandat 1050.048 kb on + strandat 1050.053 kb on + strandat 1050.054 kb on - strandat 1050.061 kb on - strandat 1050.085 kb on + strandat 1050.091 kb on - strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on + strandat 1050.093 kb on - strandat 1050.099 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.101 kb on - strandat 1050.102 kb on + strandat 1050.108 kb on - strandat 1050.114 kb on + strandat 1050.121 kb on + strandat 1050.123 kb on + strandat 1050.131 kb on - strandat 1050.145 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.183 kb on + strandat 1050.190 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.191 kb on - strandat 1050.210 kb on + strandat 1050.210 kb on + strandat 1050.216 kb on + strandat 1050.225 kb on + strandat 1050.226 kb on + strandat 1050.233 kb on - strandat 1050.234 kb on - strandat 1050.286 kb on + strandat 1050.309 kb on + strandat 1050.311 kb on + strandat 1050.312 kb on - strandat 1050.314 kb on + strandat 1050.317 kb on - strandat 1050.318 kb on + strandat 1050.319 kb on - strandat 1050.326 kb on - strandat 1050.327 kb on - strandat 1050.327 kb on - strandat 1050.327 kb on - strandat 1050.329 kb on - strandat 1050.359 kb on + strandat 1050.365 kb on - strandat 1050.367 kb on - strandat 1050.376 kb on - strandat 1050.376 kb on - strandat 1050.392 kb on - strandat 1050.394 kb on - strandat 1050.394 kb on - strandat 1050.394 kb on - strandat 1050.420 kb on + strandat 1050.428 kb on - strandat 1050.443 kb on + strand, within Dsui_1017at 1050.475 kb on - strand, within Dsui_1017at 1050.522 kb on + strand, within Dsui_1017at 1050.537 kb on + strand, within Dsui_1017at 1050.568 kb on + strand, within Dsui_1017at 1050.572 kb on + strand, within Dsui_1017at 1050.580 kb on - strand, within Dsui_1017at 1050.613 kb on - strand, within Dsui_1017at 1050.669 kb on - strand, within Dsui_1017at 1050.687 kb on + strand, within Dsui_1017at 1050.694 kb on - strand, within Dsui_1017at 1050.695 kb on - strand, within Dsui_1017at 1050.695 kb on - strand, within Dsui_1017at 1050.697 kb on + strand, within Dsui_1017at 1050.698 kb on + strand, within Dsui_1017at 1050.743 kb on - strand, within Dsui_1017at 1050.821 kb on - strandat 1050.835 kb on - strandat 1050.847 kb on - strandat 1050.863 kb on + strandat 1050.938 kb on + strandat 1050.938 kb on + strandat 1050.943 kb on + strandat 1050.986 kb on + strandat 1051.031 kb on - strandat 1051.031 kb on - strandat 1051.044 kb on + strandat 1051.059 kb on - strandat 1051.139 kb on + strandat 1051.142 kb on + strandat 1051.142 kb on + strandat 1051.142 kb on + strandat 1051.150 kb on - strandat 1051.253 kb on + strandat 1051.253 kb on + strandat 1051.254 kb on - strandat 1051.285 kb on + strandat 1051.293 kb on - strandat 1051.297 kb on - strandat 1051.385 kb on + strandat 1051.454 kb on + strand, within Dsui_1018at 1051.475 kb on + strand, within Dsui_1018at 1051.527 kb on - strand, within Dsui_1018at 1051.535 kb on + strand, within Dsui_1018at 1051.543 kb on - strand, within Dsui_1018at 1051.554 kb on - strand, within Dsui_1018at 1051.554 kb on - strand, within Dsui_1018at 1051.572 kb on - strand, within Dsui_1018at 1051.573 kb on - strand, within Dsui_1018at 1051.573 kb on - strand, within Dsui_1018at 1051.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,049,434 + -0.1
1,049,434 - +0.8
1,049,472 - -1.2
1,049,499 - -0.2
1,049,654 + -1.5
1,049,664 - +0.8
1,049,674 + -0.2
1,049,674 + -0.2
1,049,674 + +1.8
1,049,674 + -0.4
1,049,674 + -0.5
1,049,674 + -0.8
1,049,674 - -0.8
1,049,681 + -1.0
1,049,682 + +0.8
1,049,682 - +0.8
1,049,682 - -0.8
1,049,682 - -0.2
1,049,702 - +0.8
1,049,714 - +0.8
1,049,724 + +0.2
1,049,737 + +0.8
1,049,750 + -1.2
1,049,758 - -0.2
1,049,763 + +0.5
1,049,763 + -1.2
1,049,783 - +0.8
1,049,808 + -1.0
1,049,808 + -2.5
1,049,808 + -0.2
1,049,809 + -1.5
1,049,816 - +0.8
1,049,816 - -0.8
1,049,816 - -0.2
1,049,818 + +0.5
1,049,828 + -1.5
1,049,894 + -0.6
1,049,894 + -0.2
1,049,899 + -0.5
1,049,907 - +0.8
1,049,934 + -2.4
1,049,942 - -0.8
1,049,958 + +0.3
1,049,958 + +0.8
1,049,966 + -0.2
1,049,974 - -1.8
1,050,033 - -2.4
1,050,033 - +0.8
1,050,046 + -0.2
1,050,046 + -0.2
1,050,046 + -0.2
1,050,046 + +0.8
1,050,048 + -1.8
1,050,053 + -0.2
1,050,054 - +0.8
1,050,061 - -0.2
1,050,085 + -0.6
1,050,091 - +0.8
1,050,093 + -0.2
1,050,093 + +0.8
1,050,093 + +0.8
1,050,093 + -1.2
1,050,093 + +0.8
1,050,093 + -0.2
1,050,093 + -2.7
1,050,093 + +0.8
1,050,093 + -0.8
1,050,093 + +1.0
1,050,093 + +0.8
1,050,093 + -2.0
1,050,093 - -2.5
1,050,099 - -0.8
1,050,101 - -0.8
1,050,101 - +0.8
1,050,101 - +0.8
1,050,101 - -0.2
1,050,101 - +0.8
1,050,101 - -0.2
1,050,101 - +0.8
1,050,101 - -2.2
1,050,101 - -2.0
1,050,101 - +0.8
1,050,101 - -0.2
1,050,101 - -0.8
1,050,101 - +0.8
1,050,101 - +0.8
1,050,101 - -0.8
1,050,101 - -0.2
1,050,101 - -1.2
1,050,101 - -1.5
1,050,101 - -2.9
1,050,101 - -0.8
1,050,101 - +0.8
1,050,102 + -0.2
1,050,108 - -1.5
1,050,114 + -0.4
1,050,121 + +0.8
1,050,123 + +0.8
1,050,131 - -0.2
1,050,145 + -1.2
1,050,183 + -1.8
1,050,183 + -2.5
1,050,183 + +0.8
1,050,183 + +0.8
1,050,183 + -2.4
1,050,183 + -0.8
1,050,183 + +0.8
1,050,183 + -1.0
1,050,183 + -1.5
1,050,183 + -2.8
1,050,183 + -1.5
1,050,190 - +0.8
1,050,191 - -0.8
1,050,191 - -0.2
1,050,191 - +0.8
1,050,191 - +0.8
1,050,191 - -0.2
1,050,191 - +0.8
1,050,191 - -1.8
1,050,191 - -1.5
1,050,191 - +0.8
1,050,191 - +0.8
1,050,191 - -0.8
1,050,191 - +0.8
1,050,191 - +0.8
1,050,191 - -0.8
1,050,191 - +0.8
1,050,191 - -0.2
1,050,191 - -0.2
1,050,210 + -0.2
1,050,210 + -0.4
1,050,216 + +0.2
1,050,225 + -1.2
1,050,226 + +1.8
1,050,233 - +0.8
1,050,234 - +0.8
1,050,286 + +0.8
1,050,309 + -0.2
1,050,311 + +0.2
1,050,312 - -0.8
1,050,314 + -0.8
1,050,317 - +0.8
1,050,318 + -1.0
1,050,319 - -2.0
1,050,326 - +0.8
1,050,327 - -1.8
1,050,327 - +0.8
1,050,327 - +0.8
1,050,329 - -2.8
1,050,359 + +0.8
1,050,365 - +0.8
1,050,367 - -0.8
1,050,376 - -1.5
1,050,376 - +0.8
1,050,392 - -0.8
1,050,394 - +0.8
1,050,394 - +0.8
1,050,394 - -0.2
1,050,420 + -2.0
1,050,428 - -0.8
1,050,443 + Dsui_1017 0.10 -1.5
1,050,475 - Dsui_1017 0.18 +0.8
1,050,522 + Dsui_1017 0.29 +0.8
1,050,537 + Dsui_1017 0.33 -0.2
1,050,568 + Dsui_1017 0.41 -0.8
1,050,572 + Dsui_1017 0.42 +0.8
1,050,580 - Dsui_1017 0.44 -0.2
1,050,613 - Dsui_1017 0.52 -0.8
1,050,669 - Dsui_1017 0.65 +0.8
1,050,687 + Dsui_1017 0.70 -0.2
1,050,694 - Dsui_1017 0.72 +0.8
1,050,695 - Dsui_1017 0.72 -1.5
1,050,695 - Dsui_1017 0.72 -1.2
1,050,697 + Dsui_1017 0.72 -1.2
1,050,698 + Dsui_1017 0.73 -0.2
1,050,743 - Dsui_1017 0.84 +0.8
1,050,821 - -1.3
1,050,835 - +0.8
1,050,847 - +0.8
1,050,863 + +0.2
1,050,938 + -0.2
1,050,938 + +0.8
1,050,943 + -1.5
1,050,986 + -0.2
1,051,031 - +0.8
1,051,031 - -0.2
1,051,044 + -0.0
1,051,059 - -1.5
1,051,139 + +1.0
1,051,142 + -1.4
1,051,142 + +0.6
1,051,142 + -0.2
1,051,150 - -1.2
1,051,253 + -0.3
1,051,253 + -0.9
1,051,254 - +0.8
1,051,285 + +1.8
1,051,293 - +0.8
1,051,297 - +0.8
1,051,385 + +0.8
1,051,454 + Dsui_1018 0.26 +0.0
1,051,475 + Dsui_1018 0.35 -0.2
1,051,527 - Dsui_1018 0.59 +0.8
1,051,535 + Dsui_1018 0.63 +0.8
1,051,543 - Dsui_1018 0.66 +0.8
1,051,554 - Dsui_1018 0.71 -3.0
1,051,554 - Dsui_1018 0.71 -0.2
1,051,572 - Dsui_1018 0.79 -0.2
1,051,573 - Dsui_1018 0.80 -0.2
1,051,573 - Dsui_1018 0.80 -0.8
1,051,594 - -1.8

Or see this region's nucleotide sequence