Strain Fitness in Dechlorosoma suillum PS around Dsui_1012

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1011 and Dsui_1012 are separated by 135 nucleotidesDsui_1012 and Dsui_1013 are separated by 18 nucleotidesDsui_1013 and Dsui_1014 are separated by 69 nucleotides Dsui_1011: Dsui_1011 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,041,420 to 1,044,800 _1011 Dsui_1012: Dsui_1012 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,044,936 to 1,046,174 _1012 Dsui_1013: Dsui_1013 - thiamine biosynthesis protein ThiS, at 1,046,193 to 1,046,402 _1013 Dsui_1014: Dsui_1014 - putative enzyme of thiazole biosynthesis, at 1,046,472 to 1,047,257 _1014 Position (kb) 1044 1045 1046 1047Strain fitness (log2 ratio) -2 -1 0 1at 1043.967 kb on - strand, within Dsui_1011at 1043.967 kb on - strand, within Dsui_1011at 1043.992 kb on - strand, within Dsui_1011at 1044.106 kb on + strand, within Dsui_1011at 1044.226 kb on - strand, within Dsui_1011at 1044.374 kb on + strand, within Dsui_1011at 1044.534 kb on - strandat 1044.590 kb on + strandat 1044.721 kb on + strandat 1044.739 kb on - strandat 1044.818 kb on - strandat 1044.939 kb on + strandat 1044.939 kb on - strandat 1044.947 kb on - strandat 1044.973 kb on - strandat 1045.061 kb on + strand, within Dsui_1012at 1045.097 kb on - strand, within Dsui_1012at 1045.267 kb on - strand, within Dsui_1012at 1045.689 kb on - strand, within Dsui_1012at 1045.749 kb on - strand, within Dsui_1012at 1045.749 kb on - strand, within Dsui_1012at 1045.825 kb on + strandat 1045.871 kb on - strand, within Dsui_1012at 1045.877 kb on + strandat 1045.885 kb on - strand, within Dsui_1012at 1045.902 kb on + strand, within Dsui_1012at 1045.910 kb on - strand, within Dsui_1012at 1045.948 kb on + strandat 1045.963 kb on + strandat 1045.963 kb on + strandat 1045.992 kb on + strandat 1046.019 kb on + strand, within Dsui_1012at 1046.022 kb on - strand, within Dsui_1012at 1046.032 kb on - strand, within Dsui_1012at 1046.151 kb on + strandat 1046.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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1,043,967 - Dsui_1011 0.75 +0.3
1,043,967 - Dsui_1011 0.75 -0.3
1,043,992 - Dsui_1011 0.76 -0.2
1,044,106 + Dsui_1011 0.79 -1.2
1,044,226 - Dsui_1011 0.83 -0.8
1,044,374 + Dsui_1011 0.87 -1.2
1,044,534 - +0.1
1,044,590 + -0.2
1,044,721 + +0.8
1,044,739 - -0.3
1,044,818 - -0.2
1,044,939 + -2.0
1,044,939 - -1.8
1,044,947 - +0.3
1,044,973 - +1.1
1,045,061 + Dsui_1012 0.10 +0.8
1,045,097 - Dsui_1012 0.13 -0.5
1,045,267 - Dsui_1012 0.27 -1.0
1,045,689 - Dsui_1012 0.61 -0.2
1,045,749 - Dsui_1012 0.66 -1.5
1,045,749 - Dsui_1012 0.66 -0.0
1,045,825 + -0.2
1,045,871 - Dsui_1012 0.75 +0.8
1,045,877 + +0.8
1,045,885 - Dsui_1012 0.77 +0.6
1,045,902 + Dsui_1012 0.78 -0.8
1,045,910 - Dsui_1012 0.79 -0.1
1,045,948 + +0.8
1,045,963 + +0.8
1,045,963 + +0.8
1,045,992 + +0.8
1,046,019 + Dsui_1012 0.87 -1.2
1,046,022 - Dsui_1012 0.88 -1.2
1,046,032 - Dsui_1012 0.88 -0.2
1,046,151 + -0.2
1,046,152 + -2.4

Or see this region's nucleotide sequence