Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0975 and Dsui_0976 are separated by 70 nucleotides Dsui_0976 and Dsui_0977 are separated by 85 nucleotides
Dsui_0975: Dsui_0975 - acyl-CoA dehydrogenase, at 1,001,130 to 1,002,302
_0975
Dsui_0976: Dsui_0976 - acetyl-CoA acetyltransferase, at 1,002,373 to 1,003,554
_0976
Dsui_0977: Dsui_0977 - acyl-CoA dehydrogenase, at 1,003,640 to 1,004,776
_0977
Position (kb)
1002
1003
1004 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1001.421 kb on - strand, within Dsui_0975 at 1001.466 kb on + strand, within Dsui_0975 at 1001.516 kb on - strand, within Dsui_0975 at 1001.566 kb on - strand, within Dsui_0975 at 1001.578 kb on - strand, within Dsui_0975 at 1001.651 kb on + strand, within Dsui_0975 at 1001.746 kb on + strand, within Dsui_0975 at 1001.770 kb on + strand, within Dsui_0975 at 1001.954 kb on + strand, within Dsui_0975 at 1002.051 kb on + strand, within Dsui_0975 at 1002.259 kb on + strand at 1002.600 kb on + strand, within Dsui_0976 at 1002.626 kb on + strand, within Dsui_0976 at 1002.689 kb on + strand, within Dsui_0976 at 1002.884 kb on - strand, within Dsui_0976 at 1002.906 kb on - strand, within Dsui_0976 at 1002.943 kb on - strand, within Dsui_0976 at 1002.955 kb on + strand, within Dsui_0976 at 1003.072 kb on - strand, within Dsui_0976 at 1003.157 kb on - strand, within Dsui_0976 at 1003.171 kb on + strand, within Dsui_0976 at 1003.172 kb on - strand at 1003.244 kb on - strand, within Dsui_0976 at 1003.301 kb on + strand, within Dsui_0976 at 1003.466 kb on + strand at 1003.556 kb on - strand at 1003.556 kb on - strand at 1003.559 kb on + strand at 1003.559 kb on + strand at 1003.567 kb on - strand at 1003.748 kb on + strand at 1003.786 kb on + strand, within Dsui_0977 at 1003.856 kb on - strand, within Dsui_0977 at 1003.890 kb on + strand, within Dsui_0977 at 1003.933 kb on - strand, within Dsui_0977 at 1004.088 kb on + strand, within Dsui_0977 at 1004.154 kb on + strand, within Dsui_0977 at 1004.171 kb on + strand, within Dsui_0977 at 1004.189 kb on + strand, within Dsui_0977 at 1004.233 kb on + strand, within Dsui_0977
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 1,001,421 - Dsui_0975 0.25 +0.7 1,001,466 + Dsui_0975 0.29 -1.6 1,001,516 - Dsui_0975 0.33 +0.7 1,001,566 - Dsui_0975 0.37 -2.4 1,001,578 - Dsui_0975 0.38 -0.3 1,001,651 + Dsui_0975 0.44 -0.3 1,001,746 + Dsui_0975 0.53 +0.7 1,001,770 + Dsui_0975 0.55 +0.7 1,001,954 + Dsui_0975 0.70 +0.7 1,002,051 + Dsui_0975 0.79 -1.3 1,002,259 + -1.3 1,002,600 + Dsui_0976 0.19 +0.8 1,002,626 + Dsui_0976 0.21 +1.4 1,002,689 + Dsui_0976 0.27 -0.2 1,002,884 - Dsui_0976 0.43 -0.2 1,002,906 - Dsui_0976 0.45 +0.8 1,002,943 - Dsui_0976 0.48 -0.8 1,002,955 + Dsui_0976 0.49 -0.2 1,003,072 - Dsui_0976 0.59 +0.8 1,003,157 - Dsui_0976 0.66 -1.2 1,003,171 + Dsui_0976 0.68 -0.2 1,003,172 - +0.8 1,003,244 - Dsui_0976 0.74 -0.2 1,003,301 + Dsui_0976 0.79 +0.3 1,003,466 + +1.2 1,003,556 - -0.8 1,003,556 - -0.8 1,003,559 + -0.1 1,003,559 + +0.2 1,003,567 - -3.2 1,003,748 + -0.3 1,003,786 + Dsui_0977 0.13 +0.7 1,003,856 - Dsui_0977 0.19 +0.7 1,003,890 + Dsui_0977 0.22 -1.6 1,003,933 - Dsui_0977 0.26 +0.7 1,004,088 + Dsui_0977 0.39 -0.3 1,004,154 + Dsui_0977 0.45 +0.7 1,004,171 + Dsui_0977 0.47 -0.7 1,004,189 + Dsui_0977 0.48 +0.2 1,004,233 + Dsui_0977 0.52 +1.7
Or see this region's nucleotide sequence