Strain Fitness in Dechlorosoma suillum PS around Dsui_0946

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0943 and Dsui_0944 are separated by 44 nucleotidesDsui_0944 and Dsui_0945 are separated by 156 nucleotidesDsui_0945 and Dsui_0946 are separated by 10 nucleotidesDsui_0946 and Dsui_0947 are separated by 5 nucleotidesDsui_0947 and Dsui_0948 are separated by 5 nucleotides Dsui_0943: Dsui_0943 - nitrogenase cofactor biosynthesis protein NifB, at 971,700 to 973,223 _0943 Dsui_0944: Dsui_0944 - putative NADH:ubiquinone oxidoreductase, subunit RnfB, at 973,268 to 973,483 _0944 Dsui_0945: Dsui_0945 - Iron-sulfur cluster assembly accessory protein, at 973,640 to 974,056 _0945 Dsui_0946: Dsui_0946 - putative nitrogen fixation protein FixT, at 974,067 to 974,561 _0946 Dsui_0947: Dsui_0947 - hypothetical protein, at 974,567 to 975,425 _0947 Dsui_0948: Dsui_0948 - hypothetical protein, at 975,431 to 975,850 _0948 Position (kb) 974 975Strain fitness (log2 ratio) -3 -2 -1 0 1at 973.125 kb on + strandat 973.148 kb on + strandat 973.148 kb on + strandat 973.171 kb on + strandat 973.179 kb on - strandat 973.227 kb on - strandat 973.255 kb on - strandat 973.373 kb on + strand, within Dsui_0944at 973.417 kb on + strand, within Dsui_0944at 973.536 kb on + strandat 973.556 kb on - strandat 973.580 kb on - strandat 973.588 kb on + strandat 973.588 kb on + strandat 973.596 kb on + strandat 973.816 kb on + strand, within Dsui_0945at 973.864 kb on + strand, within Dsui_0945at 973.907 kb on - strand, within Dsui_0945at 974.081 kb on - strandat 974.207 kb on - strand, within Dsui_0946at 974.265 kb on + strand, within Dsui_0946at 974.340 kb on - strand, within Dsui_0946at 974.340 kb on - strandat 974.523 kb on - strandat 974.647 kb on + strandat 974.694 kb on - strand, within Dsui_0947at 974.771 kb on + strand, within Dsui_0947at 974.877 kb on + strand, within Dsui_0947at 974.959 kb on + strand, within Dsui_0947at 975.083 kb on - strand, within Dsui_0947at 975.355 kb on - strandat 975.410 kb on - strandat 975.468 kb on + strandat 975.543 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
remove
973,125 + +0.8
973,148 + +0.8
973,148 + -0.8
973,171 + +0.8
973,179 - -0.8
973,227 - -0.8
973,255 - -0.8
973,373 + Dsui_0944 0.49 -0.2
973,417 + Dsui_0944 0.69 -0.2
973,536 + -0.8
973,556 - -0.8
973,580 - -1.2
973,588 + -0.2
973,588 + +0.8
973,596 + -0.2
973,816 + Dsui_0945 0.42 +0.8
973,864 + Dsui_0945 0.54 -2.9
973,907 - Dsui_0945 0.64 -0.8
974,081 - -1.8
974,207 - Dsui_0946 0.28 -0.2
974,265 + Dsui_0946 0.40 -2.4
974,340 - Dsui_0946 0.55 -0.2
974,340 - +0.8
974,523 - -0.2
974,647 + -0.2
974,694 - Dsui_0947 0.15 -0.8
974,771 + Dsui_0947 0.24 -0.8
974,877 + Dsui_0947 0.36 -0.2
974,959 + Dsui_0947 0.46 +0.8
975,083 - Dsui_0947 0.60 -0.8
975,355 - +0.8
975,410 - -1.2
975,468 + -0.8
975,543 + +0.8

Or see this region's nucleotide sequence