Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0877 and Dsui_0878 are separated by 322 nucleotides Dsui_0878 and Dsui_0879 are separated by 14 nucleotides Dsui_0879 and Dsui_0880 are separated by 157 nucleotides Dsui_0880 and Dsui_0881 are separated by 21 nucleotides
Dsui_0877: Dsui_0877 - cytochrome c oxidase accessory protein FixG, at 889,484 to 890,863
_0877
Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821
_0878
Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144
_0879
Dsui_0880: Dsui_0880 - Bacterial regulatory protein, Fis family, at 892,302 to 892,619
_0880
Dsui_0881: Dsui_0881 - cAMP-binding protein, at 892,641 to 893,348
_0881
Position (kb)
891
892
893 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 890.858 kb on + strand at 890.858 kb on - strand at 890.903 kb on - strand at 890.954 kb on - strand at 890.985 kb on + strand at 891.001 kb on + strand at 891.002 kb on + strand at 891.008 kb on + strand at 891.008 kb on - strand at 891.009 kb on - strand at 891.054 kb on - strand at 891.067 kb on + strand at 891.099 kb on - strand at 891.119 kb on + strand at 891.144 kb on + strand at 891.144 kb on + strand at 891.162 kb on - strand at 891.184 kb on + strand at 891.223 kb on + strand at 891.223 kb on + strand at 891.228 kb on + strand at 891.233 kb on + strand at 891.233 kb on + strand at 891.241 kb on - strand at 891.244 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.255 kb on + strand, within Dsui_0878 at 891.322 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.340 kb on - strand, within Dsui_0878 at 891.377 kb on - strand at 891.388 kb on + strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.574 kb on + strand, within Dsui_0878 at 891.582 kb on - strand at 891.588 kb on - strand, within Dsui_0878 at 891.593 kb on - strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.632 kb on - strand, within Dsui_0878 at 891.632 kb on - strand at 891.632 kb on - strand, within Dsui_0878 at 891.653 kb on + strand, within Dsui_0878 at 891.661 kb on + strand, within Dsui_0878 at 891.662 kb on - strand, within Dsui_0878 at 891.769 kb on + strand at 891.787 kb on - strand at 891.803 kb on + strand at 891.806 kb on - strand at 891.815 kb on + strand at 891.816 kb on + strand at 891.818 kb on - strand at 891.847 kb on + strand at 891.905 kb on + strand, within Dsui_0879 at 891.913 kb on - strand at 891.923 kb on - strand at 891.988 kb on + strand, within Dsui_0879 at 892.073 kb on + strand, within Dsui_0879 at 892.145 kb on - strand at 892.260 kb on + strand at 892.265 kb on + strand at 892.273 kb on - strand at 892.278 kb on + strand at 892.278 kb on + strand at 892.328 kb on + strand at 892.330 kb on - strand at 892.336 kb on - strand at 892.341 kb on - strand, within Dsui_0880 at 892.403 kb on - strand, within Dsui_0880 at 892.467 kb on + strand, within Dsui_0880 at 892.481 kb on + strand, within Dsui_0880 at 892.497 kb on + strand, within Dsui_0880 at 892.497 kb on - strand, within Dsui_0880 at 892.523 kb on + strand at 892.575 kb on - strand, within Dsui_0880 at 892.590 kb on + strand at 892.686 kb on - strand at 892.693 kb on + strand at 892.719 kb on + strand, within Dsui_0881 at 892.743 kb on + strand, within Dsui_0881 at 892.751 kb on - strand, within Dsui_0881 at 892.758 kb on + strand, within Dsui_0881 at 892.771 kb on - strand at 892.787 kb on - strand, within Dsui_0881 at 892.821 kb on - strand, within Dsui_0881 at 892.876 kb on - strand, within Dsui_0881 at 892.900 kb on - strand, within Dsui_0881 at 892.921 kb on + strand, within Dsui_0881 at 892.929 kb on + strand, within Dsui_0881 at 893.065 kb on - strand, within Dsui_0881
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 890,858 + -0.2 890,858 - +0.8 890,903 - -1.6 890,954 - -0.2 890,985 + +0.8 891,001 + +0.8 891,002 + +0.8 891,008 + -1.6 891,008 - +0.8 891,009 - +0.8 891,054 - -0.2 891,067 + -2.2 891,099 - -0.2 891,119 + -0.8 891,144 + +0.8 891,144 + +0.8 891,162 - -0.2 891,184 + -1.2 891,223 + +0.8 891,223 + -2.7 891,228 + -0.2 891,233 + -0.8 891,233 + -0.8 891,241 - +0.8 891,244 + -0.8 891,250 + Dsui_0878 0.10 -0.8 891,250 + Dsui_0878 0.10 -0.2 891,250 + -0.2 891,250 + Dsui_0878 0.10 -0.2 891,255 + Dsui_0878 0.11 -0.8 891,322 + Dsui_0878 0.21 -0.2 891,332 + Dsui_0878 0.23 +0.8 891,332 + Dsui_0878 0.23 -0.8 891,340 - Dsui_0878 0.24 -1.6 891,377 - +0.8 891,388 + Dsui_0878 0.32 +0.8 891,396 - Dsui_0878 0.33 +0.8 891,396 - Dsui_0878 0.33 -1.2 891,574 + Dsui_0878 0.61 -1.6 891,582 - +0.8 891,588 - Dsui_0878 0.63 -1.6 891,593 - Dsui_0878 0.64 -0.8 891,624 + Dsui_0878 0.69 -0.2 891,624 + Dsui_0878 0.69 +0.8 891,624 + Dsui_0878 0.69 -0.8 891,624 + Dsui_0878 0.69 -0.8 891,628 + Dsui_0878 0.69 -2.2 891,628 + Dsui_0878 0.69 -0.8 891,632 - Dsui_0878 0.70 +0.8 891,632 - +0.8 891,632 - Dsui_0878 0.70 -1.6 891,653 + Dsui_0878 0.73 +0.8 891,661 + Dsui_0878 0.75 -3.0 891,662 - Dsui_0878 0.75 -0.2 891,769 + +0.8 891,787 - -0.2 891,803 + +0.8 891,806 - +0.8 891,815 + +0.8 891,816 + -0.2 891,818 - +0.8 891,847 + -0.8 891,905 + Dsui_0879 0.22 -0.2 891,913 - +0.8 891,923 - +0.8 891,988 + Dsui_0879 0.49 -1.2 892,073 + Dsui_0879 0.77 +0.8 892,145 - -0.8 892,260 + +0.8 892,265 + -2.2 892,273 - +0.8 892,278 + -0.2 892,278 + -0.8 892,328 + -0.8 892,330 - -0.8 892,336 - +0.8 892,341 - Dsui_0880 0.12 -0.8 892,403 - Dsui_0880 0.32 -0.2 892,467 + Dsui_0880 0.52 +0.8 892,481 + Dsui_0880 0.56 +0.8 892,497 + Dsui_0880 0.61 -2.4 892,497 - Dsui_0880 0.61 -2.4 892,523 + +0.8 892,575 - Dsui_0880 0.86 +0.8 892,590 + +0.8 892,686 - -0.8 892,693 + -1.6 892,719 + Dsui_0881 0.11 +0.8 892,743 + Dsui_0881 0.14 -0.8 892,751 - Dsui_0881 0.16 -1.5 892,758 + Dsui_0881 0.17 -0.2 892,771 - +0.8 892,787 - Dsui_0881 0.21 -1.2 892,821 - Dsui_0881 0.25 +0.8 892,876 - Dsui_0881 0.33 +0.8 892,900 - Dsui_0881 0.37 -0.8 892,921 + Dsui_0881 0.40 +0.8 892,929 + Dsui_0881 0.41 -1.5 893,065 - Dsui_0881 0.60 -1.5
Or see this region's nucleotide sequence