Strain Fitness in Dechlorosoma suillum PS around Dsui_0875

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0873 and Dsui_0874 overlap by 20 nucleotidesDsui_0874 and Dsui_0875 overlap by 17 nucleotidesDsui_0875 and Dsui_0876 overlap by 4 nucleotidesDsui_0876 and Dsui_0877 are separated by 4 nucleotides Dsui_0873: Dsui_0873 - orotate phosphoribosyltransferase, at 887,112 to 887,756 _0873 Dsui_0874: Dsui_0874 - hypothetical protein, at 887,737 to 888,453 _0874 Dsui_0875: Dsui_0875 - putative branched-chain amino acid permease (azaleucine resistance), at 888,437 to 889,180 _0875 Dsui_0876: Dsui_0876 - putative membrane protein, at 889,177 to 889,479 _0876 Dsui_0877: Dsui_0877 - cytochrome c oxidase accessory protein FixG, at 889,484 to 890,863 _0877 Position (kb) 888 889 890Strain fitness (log2 ratio) -2 -1 0 1at 887.758 kb on - strandat 887.765 kb on + strandat 887.804 kb on - strandat 887.811 kb on + strand, within Dsui_0874at 887.835 kb on - strand, within Dsui_0874at 887.980 kb on - strand, within Dsui_0874at 888.054 kb on + strand, within Dsui_0874at 888.054 kb on + strand, within Dsui_0874at 888.055 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.066 kb on + strand, within Dsui_0874at 888.074 kb on + strand, within Dsui_0874at 888.074 kb on + strand, within Dsui_0874at 888.074 kb on - strandat 888.074 kb on - strand, within Dsui_0874at 888.074 kb on - strand, within Dsui_0874at 888.081 kb on - strand, within Dsui_0874at 888.102 kb on + strand, within Dsui_0874at 888.188 kb on - strand, within Dsui_0874at 888.238 kb on - strand, within Dsui_0874at 888.238 kb on - strandat 888.240 kb on + strand, within Dsui_0874at 888.304 kb on + strand, within Dsui_0874at 888.340 kb on - strand, within Dsui_0874at 888.342 kb on + strand, within Dsui_0874at 888.369 kb on - strand, within Dsui_0874at 888.409 kb on - strandat 888.411 kb on + strandat 888.417 kb on + strandat 888.426 kb on + strandat 888.518 kb on + strand, within Dsui_0875at 888.623 kb on + strand, within Dsui_0875at 888.646 kb on - strand, within Dsui_0875at 888.666 kb on - strandat 888.725 kb on + strand, within Dsui_0875at 888.725 kb on + strand, within Dsui_0875at 888.725 kb on + strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875at 888.782 kb on - strand, within Dsui_0875at 888.788 kb on - strand, within Dsui_0875at 888.793 kb on - strand, within Dsui_0875at 888.914 kb on - strand, within Dsui_0875at 889.097 kb on + strand, within Dsui_0875at 889.100 kb on - strandat 889.102 kb on + strand, within Dsui_0875at 889.120 kb on - strandat 889.120 kb on - strandat 889.156 kb on + strandat 889.158 kb on + strandat 889.158 kb on + strandat 889.164 kb on - strandat 889.352 kb on - strandat 889.393 kb on + strand, within Dsui_0876at 889.398 kb on - strand, within Dsui_0876at 889.432 kb on - strandat 889.475 kb on + strandat 889.539 kb on + strandat 889.540 kb on - strandat 889.604 kb on + strandat 889.610 kb on + strandat 889.638 kb on + strandat 889.653 kb on + strand, within Dsui_0877at 889.726 kb on + strandat 889.726 kb on + strand, within Dsui_0877at 889.734 kb on - strand, within Dsui_0877at 889.828 kb on + strand, within Dsui_0877at 889.828 kb on + strand, within Dsui_0877at 889.828 kb on + strand, within Dsui_0877at 889.846 kb on + strand, within Dsui_0877at 889.856 kb on + strand, within Dsui_0877at 889.864 kb on - strand, within Dsui_0877at 889.917 kb on + strand, within Dsui_0877at 889.954 kb on + strand, within Dsui_0877at 890.016 kb on - strandat 890.016 kb on - strand, within Dsui_0877at 890.098 kb on + strand, within Dsui_0877

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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887,758 - +0.8
887,765 + -0.3
887,804 - +0.8
887,811 + Dsui_0874 0.10 +0.0
887,835 - Dsui_0874 0.14 -0.2
887,980 - Dsui_0874 0.34 -0.8
888,054 + Dsui_0874 0.44 +0.1
888,054 + Dsui_0874 0.44 -0.1
888,055 + Dsui_0874 0.44 -0.2
888,066 + Dsui_0874 0.46 -0.2
888,066 + Dsui_0874 0.46 -0.3
888,066 + Dsui_0874 0.46 -0.1
888,066 + Dsui_0874 0.46 +0.0
888,066 + Dsui_0874 0.46 +0.1
888,074 + Dsui_0874 0.47 +0.0
888,074 + Dsui_0874 0.47 +0.5
888,074 - -0.2
888,074 - Dsui_0874 0.47 -0.2
888,074 - Dsui_0874 0.47 +0.8
888,081 - Dsui_0874 0.48 -0.8
888,102 + Dsui_0874 0.51 -0.1
888,188 - Dsui_0874 0.63 -0.2
888,238 - Dsui_0874 0.70 -0.2
888,238 - +0.8
888,240 + Dsui_0874 0.70 +0.6
888,304 + Dsui_0874 0.79 +0.1
888,340 - Dsui_0874 0.84 -0.2
888,342 + Dsui_0874 0.84 +0.1
888,369 - Dsui_0874 0.88 +0.8
888,409 - -0.8
888,411 + +0.1
888,417 + -0.3
888,426 + -0.2
888,518 + Dsui_0875 0.11 +0.1
888,623 + Dsui_0875 0.25 +0.1
888,646 - Dsui_0875 0.28 -0.8
888,666 - +0.8
888,725 + Dsui_0875 0.39 -0.0
888,725 + Dsui_0875 0.39 +1.0
888,725 + Dsui_0875 0.39 -0.4
888,733 - Dsui_0875 0.40 -1.2
888,733 - Dsui_0875 0.40 -0.2
888,733 - Dsui_0875 0.40 +0.8
888,782 - Dsui_0875 0.46 -0.2
888,788 - Dsui_0875 0.47 -0.2
888,793 - Dsui_0875 0.48 -0.2
888,914 - Dsui_0875 0.64 +0.8
889,097 + Dsui_0875 0.89 -0.2
889,100 - -0.2
889,102 + Dsui_0875 0.89 +0.8
889,120 - -2.4
889,120 - -0.2
889,156 + -0.9
889,158 + -0.3
889,158 + +0.1
889,164 - +0.8
889,352 - -0.8
889,393 + Dsui_0876 0.71 -0.2
889,398 - Dsui_0876 0.73 -1.2
889,432 - -0.2
889,475 + -1.6
889,539 + -0.2
889,540 - -0.8
889,604 + -2.6
889,610 + -0.2
889,638 + -0.8
889,653 + Dsui_0877 0.12 -2.2
889,726 + +0.8
889,726 + Dsui_0877 0.18 -0.2
889,734 - Dsui_0877 0.18 -0.8
889,828 + Dsui_0877 0.25 -0.2
889,828 + Dsui_0877 0.25 -1.8
889,828 + Dsui_0877 0.25 +0.8
889,846 + Dsui_0877 0.26 -0.2
889,856 + Dsui_0877 0.27 +0.8
889,864 - Dsui_0877 0.28 -0.8
889,917 + Dsui_0877 0.31 -1.2
889,954 + Dsui_0877 0.34 +0.8
890,016 - +0.8
890,016 - Dsui_0877 0.39 -0.2
890,098 + Dsui_0877 0.44 -1.6

Or see this region's nucleotide sequence