Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0730 and Dsui_0731 are separated by 18 nucleotides Dsui_0731 and Dsui_0732 are separated by 12 nucleotides Dsui_0732 and Dsui_0733 are separated by 12 nucleotides Dsui_0733 and Dsui_0734 overlap by 4 nucleotides
Dsui_0730: Dsui_0730 - microcystin-dependent protein, at 728,754 to 729,293
_0730
Dsui_0731: Dsui_0731 - microcystin-dependent protein, at 729,312 to 729,833
_0731
Dsui_0732: Dsui_0732 - microcystin-dependent protein, at 729,846 to 730,379
_0732
Dsui_0733: Dsui_0733 - hypothetical protein, at 730,392 to 730,703
_0733
Dsui_0734: Dsui_0734 - acetyltransferase, at 730,700 to 731,239
_0734
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1 at 728.892 kb on + strand, within Dsui_0730 at 728.938 kb on + strand, within Dsui_0730 at 728.963 kb on + strand, within Dsui_0730 at 728.971 kb on - strand, within Dsui_0730 at 728.987 kb on + strand, within Dsui_0730 at 728.998 kb on + strand, within Dsui_0730 at 729.157 kb on + strand, within Dsui_0730 at 729.165 kb on - strand, within Dsui_0730 at 729.297 kb on - strand at 729.346 kb on - strand at 729.381 kb on + strand, within Dsui_0731 at 729.393 kb on + strand, within Dsui_0731 at 729.412 kb on - strand, within Dsui_0731 at 729.426 kb on + strand, within Dsui_0731 at 729.435 kb on + strand, within Dsui_0731 at 729.440 kb on + strand, within Dsui_0731 at 729.547 kb on - strand, within Dsui_0731 at 729.553 kb on + strand, within Dsui_0731 at 729.591 kb on - strand, within Dsui_0731 at 729.616 kb on - strand, within Dsui_0731 at 729.632 kb on - strand, within Dsui_0731 at 729.656 kb on - strand, within Dsui_0731 at 729.663 kb on - strand, within Dsui_0731 at 729.728 kb on - strand, within Dsui_0731 at 729.760 kb on - strand, within Dsui_0731 at 729.772 kb on + strand, within Dsui_0731 at 729.777 kb on + strand, within Dsui_0731 at 729.837 kb on + strand at 729.906 kb on - strand, within Dsui_0732 at 730.012 kb on + strand, within Dsui_0732 at 730.020 kb on - strand, within Dsui_0732 at 730.097 kb on + strand, within Dsui_0732 at 730.131 kb on + strand at 730.134 kb on - strand, within Dsui_0732 at 730.152 kb on + strand, within Dsui_0732 at 730.152 kb on + strand, within Dsui_0732 at 730.160 kb on - strand, within Dsui_0732 at 730.196 kb on - strand, within Dsui_0732 at 730.204 kb on - strand, within Dsui_0732 at 730.211 kb on + strand, within Dsui_0732 at 730.219 kb on - strand, within Dsui_0732 at 730.223 kb on - strand, within Dsui_0732 at 730.316 kb on + strand, within Dsui_0732 at 730.316 kb on + strand at 730.318 kb on + strand, within Dsui_0732 at 730.324 kb on - strand, within Dsui_0732 at 730.324 kb on - strand, within Dsui_0732 at 730.324 kb on - strand, within Dsui_0732 at 730.325 kb on - strand, within Dsui_0732 at 730.333 kb on + strand at 730.398 kb on - strand at 730.498 kb on - strand, within Dsui_0733 at 730.524 kb on - strand, within Dsui_0733 at 730.551 kb on + strand, within Dsui_0733 at 730.559 kb on - strand, within Dsui_0733 at 730.607 kb on - strand, within Dsui_0733 at 730.644 kb on + strand, within Dsui_0733 at 730.657 kb on + strand at 730.707 kb on + strand at 730.707 kb on + strand at 730.728 kb on + strand at 730.865 kb on - strand, within Dsui_0734 at 731.030 kb on - strand, within Dsui_0734 at 731.080 kb on - strand, within Dsui_0734 at 731.202 kb on - strand at 731.202 kb on - strand at 731.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 728,892 + Dsui_0730 0.26 -0.2 728,938 + Dsui_0730 0.34 -2.1 728,963 + Dsui_0730 0.39 +0.8 728,971 - Dsui_0730 0.40 -0.2 728,987 + Dsui_0730 0.43 -1.6 728,998 + Dsui_0730 0.45 +0.8 729,157 + Dsui_0730 0.75 -0.2 729,165 - Dsui_0730 0.76 -0.2 729,297 - +0.8 729,346 - -1.2 729,381 + Dsui_0731 0.13 +0.8 729,393 + Dsui_0731 0.16 +0.8 729,412 - Dsui_0731 0.19 -0.8 729,426 + Dsui_0731 0.22 +0.8 729,435 + Dsui_0731 0.24 -0.2 729,440 + Dsui_0731 0.25 -0.2 729,547 - Dsui_0731 0.45 +0.8 729,553 + Dsui_0731 0.46 +0.8 729,591 - Dsui_0731 0.53 -0.8 729,616 - Dsui_0731 0.58 +0.8 729,632 - Dsui_0731 0.61 -0.2 729,656 - Dsui_0731 0.66 -0.8 729,663 - Dsui_0731 0.67 -0.8 729,728 - Dsui_0731 0.80 -0.2 729,760 - Dsui_0731 0.86 -0.2 729,772 + Dsui_0731 0.88 +0.8 729,777 + Dsui_0731 0.89 -0.8 729,837 + -0.2 729,906 - Dsui_0732 0.11 +0.8 730,012 + Dsui_0732 0.31 -0.2 730,020 - Dsui_0732 0.33 -0.2 730,097 + Dsui_0732 0.47 +0.8 730,131 + +0.8 730,134 - Dsui_0732 0.54 -0.8 730,152 + Dsui_0732 0.57 -0.8 730,152 + Dsui_0732 0.57 +0.8 730,160 - Dsui_0732 0.59 +0.8 730,196 - Dsui_0732 0.66 -0.2 730,204 - Dsui_0732 0.67 -0.2 730,211 + Dsui_0732 0.68 -1.2 730,219 - Dsui_0732 0.70 -0.8 730,223 - Dsui_0732 0.71 -0.2 730,316 + Dsui_0732 0.88 +0.8 730,316 + +0.8 730,318 + Dsui_0732 0.88 -1.2 730,324 - Dsui_0732 0.90 +0.8 730,324 - Dsui_0732 0.90 +0.8 730,324 - Dsui_0732 0.90 -0.6 730,325 - Dsui_0732 0.90 +0.8 730,333 + -0.8 730,398 - -0.2 730,498 - Dsui_0733 0.34 -1.8 730,524 - Dsui_0733 0.42 -2.2 730,551 + Dsui_0733 0.51 -0.2 730,559 - Dsui_0733 0.54 +0.8 730,607 - Dsui_0733 0.69 +0.8 730,644 + Dsui_0733 0.81 -1.6 730,657 + +0.8 730,707 + +0.8 730,707 + -1.2 730,728 + -2.6 730,865 - Dsui_0734 0.31 -0.2 731,030 - Dsui_0734 0.61 -1.2 731,080 - Dsui_0734 0.70 -0.2 731,202 - +0.8 731,202 - -1.6 731,242 - -1.2
Or see this region's nucleotide sequence