Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0721 and Dsui_0722 overlap by 4 nucleotides Dsui_0722 and Dsui_0723 are separated by 427 nucleotides Dsui_0723 and Dsui_0724 are separated by 226 nucleotides
Dsui_0721: Dsui_0721 - radical SAM additional 4Fe4S-binding domain protein, at 714,229 to 715,599
_0721
Dsui_0722: Dsui_0722 - hypothetical protein, at 715,596 to 715,766
_0722
Dsui_0723: Dsui_0723 - chemotaxis signal transduction protein, at 716,194 to 718,851
_0723
Dsui_0724: Dsui_0724 - ABC-type multidrug transport system, ATPase component, at 719,078 to 720,001
_0724
Position (kb)
716
717
718
719 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 715.265 kb on + strand, within Dsui_0721 at 715.384 kb on - strand, within Dsui_0721 at 715.392 kb on - strand, within Dsui_0721 at 715.587 kb on - strand at 715.683 kb on + strand at 715.714 kb on - strand at 715.772 kb on - strand at 715.866 kb on - strand at 715.971 kb on - strand at 716.079 kb on + strand at 716.087 kb on - strand at 716.125 kb on + strand at 716.478 kb on - strand, within Dsui_0723 at 716.496 kb on + strand at 716.564 kb on - strand, within Dsui_0723 at 716.683 kb on + strand, within Dsui_0723 at 716.683 kb on + strand at 716.691 kb on - strand, within Dsui_0723 at 716.692 kb on - strand, within Dsui_0723 at 716.792 kb on - strand, within Dsui_0723 at 716.838 kb on - strand at 717.142 kb on + strand, within Dsui_0723 at 717.143 kb on + strand, within Dsui_0723 at 717.217 kb on - strand, within Dsui_0723 at 717.262 kb on - strand, within Dsui_0723 at 717.298 kb on - strand, within Dsui_0723 at 717.320 kb on - strand, within Dsui_0723 at 717.333 kb on + strand, within Dsui_0723 at 717.392 kb on + strand, within Dsui_0723 at 717.392 kb on + strand, within Dsui_0723 at 717.392 kb on + strand, within Dsui_0723 at 717.400 kb on - strand at 717.400 kb on - strand, within Dsui_0723 at 717.400 kb on - strand, within Dsui_0723 at 717.400 kb on - strand, within Dsui_0723 at 717.402 kb on - strand, within Dsui_0723 at 717.425 kb on + strand, within Dsui_0723 at 717.475 kb on + strand at 717.480 kb on + strand, within Dsui_0723 at 717.633 kb on + strand, within Dsui_0723 at 717.672 kb on + strand, within Dsui_0723 at 717.685 kb on - strand, within Dsui_0723 at 717.698 kb on + strand at 717.745 kb on - strand, within Dsui_0723 at 717.822 kb on - strand at 717.826 kb on + strand at 717.847 kb on + strand at 717.920 kb on + strand, within Dsui_0723 at 717.955 kb on + strand, within Dsui_0723 at 717.955 kb on + strand, within Dsui_0723 at 717.956 kb on + strand, within Dsui_0723 at 718.020 kb on - strand, within Dsui_0723 at 718.025 kb on - strand, within Dsui_0723 at 718.176 kb on + strand, within Dsui_0723 at 718.185 kb on - strand, within Dsui_0723 at 718.390 kb on + strand, within Dsui_0723 at 718.390 kb on + strand, within Dsui_0723 at 718.398 kb on - strand, within Dsui_0723 at 718.419 kb on + strand, within Dsui_0723 at 718.437 kb on - strand, within Dsui_0723 at 718.460 kb on - strand, within Dsui_0723 at 718.578 kb on - strand at 718.589 kb on - strand at 718.663 kb on + strand at 718.666 kb on - strand at 718.691 kb on - strand at 718.866 kb on - strand at 718.866 kb on - strand at 718.913 kb on - strand at 718.973 kb on - strand at 719.001 kb on + strand at 719.035 kb on + strand at 719.083 kb on + strand at 719.166 kb on - strand at 719.326 kb on + strand, within Dsui_0724 at 719.422 kb on + strand at 719.430 kb on + strand, within Dsui_0724 at 719.430 kb on - strand, within Dsui_0724 at 719.430 kb on - strand, within Dsui_0724 at 719.499 kb on + strand, within Dsui_0724 at 719.499 kb on + strand, within Dsui_0724 at 719.596 kb on - strand, within Dsui_0724 at 719.692 kb on - strand, within Dsui_0724 at 719.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 715,265 + Dsui_0721 0.76 -1.8 715,384 - Dsui_0721 0.84 -1.6 715,392 - Dsui_0721 0.85 +1.8 715,587 - -0.2 715,683 + +0.8 715,714 - +0.8 715,772 - +0.8 715,866 - -1.8 715,971 - -1.2 716,079 + -0.7 716,087 - -0.2 716,125 + -0.8 716,478 - Dsui_0723 0.11 -1.2 716,496 + -0.2 716,564 - Dsui_0723 0.14 -0.8 716,683 + Dsui_0723 0.18 -0.8 716,683 + +0.8 716,691 - Dsui_0723 0.19 -0.8 716,692 - Dsui_0723 0.19 -0.2 716,792 - Dsui_0723 0.22 +0.8 716,838 - +0.8 717,142 + Dsui_0723 0.36 -1.2 717,143 + Dsui_0723 0.36 +0.8 717,217 - Dsui_0723 0.38 -0.2 717,262 - Dsui_0723 0.40 -2.2 717,298 - Dsui_0723 0.42 +0.8 717,320 - Dsui_0723 0.42 -1.2 717,333 + Dsui_0723 0.43 -1.2 717,392 + Dsui_0723 0.45 -0.2 717,392 + Dsui_0723 0.45 -0.8 717,392 + Dsui_0723 0.45 -1.6 717,400 - +0.8 717,400 - Dsui_0723 0.45 +0.8 717,400 - Dsui_0723 0.45 -2.6 717,400 - Dsui_0723 0.45 -1.2 717,402 - Dsui_0723 0.45 -0.8 717,425 + Dsui_0723 0.46 -0.2 717,475 + +0.8 717,480 + Dsui_0723 0.48 -0.2 717,633 + Dsui_0723 0.54 -1.2 717,672 + Dsui_0723 0.56 -1.2 717,685 - Dsui_0723 0.56 +0.8 717,698 + +0.8 717,745 - Dsui_0723 0.58 -2.2 717,822 - +0.8 717,826 + +0.8 717,847 + +0.8 717,920 + Dsui_0723 0.65 +0.8 717,955 + Dsui_0723 0.66 -0.2 717,955 + Dsui_0723 0.66 -1.6 717,956 + Dsui_0723 0.66 +0.8 718,020 - Dsui_0723 0.69 -1.8 718,025 - Dsui_0723 0.69 +0.8 718,176 + Dsui_0723 0.75 -0.8 718,185 - Dsui_0723 0.75 -0.2 718,390 + Dsui_0723 0.83 -0.2 718,390 + Dsui_0723 0.83 -1.2 718,398 - Dsui_0723 0.83 -0.2 718,419 + Dsui_0723 0.84 -0.2 718,437 - Dsui_0723 0.84 +0.8 718,460 - Dsui_0723 0.85 -0.2 718,578 - +0.8 718,589 - -0.2 718,663 + +0.8 718,666 - -2.2 718,691 - +0.8 718,866 - -1.2 718,866 - +0.3 718,913 - -0.1 718,973 - +0.3 719,001 + +0.8 719,035 + +0.8 719,083 + -0.2 719,166 - -0.3 719,326 + Dsui_0724 0.27 -1.6 719,422 + +0.8 719,430 + Dsui_0724 0.38 -1.2 719,430 - Dsui_0724 0.38 -0.3 719,430 - Dsui_0724 0.38 +0.2 719,499 + Dsui_0724 0.46 +0.8 719,499 + Dsui_0724 0.46 +0.8 719,596 - Dsui_0724 0.56 -0.3 719,692 - Dsui_0724 0.66 +0.1 719,851 + +0.8
Or see this region's nucleotide sequence