Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0601 and Dsui_0602 are separated by 39 nucleotides Dsui_0602 and Dsui_0603 are separated by 13 nucleotides Dsui_0603 and Dsui_0604 are separated by 158 nucleotides
Dsui_0601: Dsui_0601 - putative integral membrane protein, at 596,677 to 597,249
_0601
Dsui_0602: Dsui_0602 - pyrroline-5-carboxylate reductase, at 597,289 to 598,101
_0602
Dsui_0603: Dsui_0603 - pyridoxal phosphate enzyme, YggS family, at 598,115 to 598,819
_0603
Dsui_0604: Dsui_0604 - pilus retraction protein PilT, at 598,978 to 600,021
_0604
Position (kb) 598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 597.140 kb on - strand, within Dsui_0601 at 597.274 kb on - strand at 597.280 kb on - strand at 597.310 kb on + strand at 598.160 kb on - strand at 598.176 kb on + strand at 598.200 kb on + strand, within Dsui_0603 at 598.212 kb on + strand, within Dsui_0603 at 598.262 kb on + strand, within Dsui_0603 at 598.355 kb on - strand, within Dsui_0603 at 598.409 kb on + strand at 598.451 kb on - strand, within Dsui_0603 at 598.564 kb on + strand at 598.710 kb on + strand, within Dsui_0603 at 598.712 kb on - strand, within Dsui_0603 at 598.744 kb on + strand, within Dsui_0603 at 598.781 kb on + strand at 598.917 kb on - strand at 598.938 kb on - strand at 598.962 kb on + strand at 599.128 kb on + strand, within Dsui_0604 at 599.128 kb on + strand, within Dsui_0604 at 599.154 kb on + strand, within Dsui_0604 at 599.209 kb on - strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.356 kb on - strand, within Dsui_0604 at 599.369 kb on - strand at 599.385 kb on + strand, within Dsui_0604 at 599.387 kb on + strand, within Dsui_0604 at 599.398 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.479 kb on + strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.516 kb on + strand, within Dsui_0604 at 599.542 kb on - strand, within Dsui_0604 at 599.544 kb on + strand, within Dsui_0604 at 599.598 kb on + strand, within Dsui_0604 at 599.755 kb on - strand, within Dsui_0604
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 597,140 - Dsui_0601 0.81 +0.2 597,274 - -0.0 597,280 - +0.4 597,310 + +0.7 598,160 - -1.1 598,176 + +0.7 598,200 + Dsui_0603 0.12 -0.3 598,212 + Dsui_0603 0.14 -2.3 598,262 + Dsui_0603 0.21 -1.6 598,355 - Dsui_0603 0.34 -0.6 598,409 + +0.7 598,451 - Dsui_0603 0.48 -0.2 598,564 + -0.3 598,710 + Dsui_0603 0.84 -1.6 598,712 - Dsui_0603 0.85 -0.2 598,744 + Dsui_0603 0.89 -2.8 598,781 + +0.7 598,917 - -1.6 598,938 - -1.3 598,962 + -0.5 599,128 + Dsui_0604 0.14 -0.9 599,128 + Dsui_0604 0.14 -0.6 599,154 + Dsui_0604 0.17 -0.9 599,209 - Dsui_0604 0.22 -2.1 599,291 + Dsui_0604 0.30 -0.4 599,291 + Dsui_0604 0.30 -0.3 599,291 + Dsui_0604 0.30 -0.9 599,291 + Dsui_0604 0.30 -0.9 599,356 - Dsui_0604 0.36 -0.3 599,369 - +0.7 599,385 + Dsui_0604 0.39 -1.1 599,387 + Dsui_0604 0.39 -0.8 599,398 - Dsui_0604 0.40 -1.3 599,447 - Dsui_0604 0.45 -2.1 599,447 - Dsui_0604 0.45 -2.6 599,479 + Dsui_0604 0.48 -1.0 599,487 - Dsui_0604 0.49 -1.6 599,487 - Dsui_0604 0.49 -0.3 599,516 + Dsui_0604 0.52 -0.7 599,542 - Dsui_0604 0.54 +0.7 599,544 + Dsui_0604 0.54 -0.9 599,598 + Dsui_0604 0.59 -0.8 599,755 - Dsui_0604 0.74 -1.3
Or see this region's nucleotide sequence