Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0597 and Dsui_0598 are separated by 81 nucleotides Dsui_0598 and Dsui_0599 are separated by 136 nucleotides Dsui_0599 and Dsui_0600 are separated by 42 nucleotides Dsui_0600 and Dsui_0601 overlap by 1 nucleotides Dsui_0601 and Dsui_0602 are separated by 39 nucleotides
Dsui_0597: Dsui_0597 - dihydroorotase, multifunctional complex type, at 593,866 to 595,110
_0597
Dsui_0598: Dsui_0598 - hypothetical protein, at 595,192 to 595,494
_0598
Dsui_0599: Dsui_0599 - response regulator of the LytR/AlgR family, at 595,631 to 596,344
_0599
Dsui_0600: Dsui_0600 - TIGR00251 family protein, at 596,387 to 596,677
_0600
Dsui_0601: Dsui_0601 - putative integral membrane protein, at 596,677 to 597,249
_0601
Dsui_0602: Dsui_0602 - pyrroline-5-carboxylate reductase, at 597,289 to 598,101
_0602
Position (kb) 595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 595.104 kb on + strand at 595.288 kb on + strand, within Dsui_0598 at 595.292 kb on + strand, within Dsui_0598 at 595.297 kb on + strand, within Dsui_0598 at 595.305 kb on - strand, within Dsui_0598 at 595.399 kb on - strand, within Dsui_0598 at 595.539 kb on - strand at 595.751 kb on + strand, within Dsui_0599 at 595.795 kb on - strand at 595.928 kb on + strand, within Dsui_0599 at 596.051 kb on + strand, within Dsui_0599 at 596.069 kb on + strand, within Dsui_0599 at 596.088 kb on - strand, within Dsui_0599 at 596.105 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.115 kb on - strand, within Dsui_0599 at 596.138 kb on + strand, within Dsui_0599 at 596.206 kb on + strand, within Dsui_0599 at 596.214 kb on - strand, within Dsui_0599 at 596.348 kb on - strand at 596.540 kb on - strand, within Dsui_0600 at 596.595 kb on + strand, within Dsui_0600 at 596.710 kb on - strand at 596.812 kb on - strand, within Dsui_0601 at 597.140 kb on - strand, within Dsui_0601 at 597.274 kb on - strand at 597.280 kb on - strand at 597.310 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 595,104 + -0.2 595,288 + Dsui_0598 0.32 -2.5 595,292 + Dsui_0598 0.33 -1.5 595,297 + Dsui_0598 0.35 -0.9 595,305 - Dsui_0598 0.37 +0.3 595,399 - Dsui_0598 0.68 -2.6 595,539 - -3.1 595,751 + Dsui_0599 0.17 +0.7 595,795 - -0.9 595,928 + Dsui_0599 0.42 +0.7 596,051 + Dsui_0599 0.59 -0.9 596,069 + Dsui_0599 0.61 +0.7 596,088 - Dsui_0599 0.64 -0.9 596,105 + Dsui_0599 0.66 -0.9 596,107 + Dsui_0599 0.67 -1.9 596,107 + Dsui_0599 0.67 -0.3 596,107 + Dsui_0599 0.67 -1.3 596,107 + Dsui_0599 0.67 +0.1 596,107 + Dsui_0599 0.67 -1.6 596,107 + Dsui_0599 0.67 -0.2 596,107 + Dsui_0599 0.67 -1.9 596,107 + Dsui_0599 0.67 -1.3 596,115 - Dsui_0599 0.68 +0.1 596,115 - Dsui_0599 0.68 -0.4 596,115 - Dsui_0599 0.68 +2.3 596,115 - Dsui_0599 0.68 -0.3 596,115 - Dsui_0599 0.68 -0.9 596,115 - Dsui_0599 0.68 -0.6 596,115 - Dsui_0599 0.68 +1.3 596,138 + Dsui_0599 0.71 -1.3 596,206 + Dsui_0599 0.81 +0.7 596,214 - Dsui_0599 0.82 -1.9 596,348 - -0.3 596,540 - Dsui_0600 0.53 -0.3 596,595 + Dsui_0600 0.71 -1.3 596,710 - -0.6 596,812 - Dsui_0601 0.24 -1.1 597,140 - Dsui_0601 0.81 +0.2 597,274 - -0.0 597,280 - +0.4 597,310 + +0.7
Or see this region's nucleotide sequence