Strain Fitness in Dechlorosoma suillum PS around Dsui_0550

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0548 and Dsui_0549 overlap by 1 nucleotidesDsui_0549 and Dsui_0550 are separated by 240 nucleotidesDsui_0550 and Dsui_0551 overlap by 8 nucleotides Dsui_0548: Dsui_0548 - putative transporter component, at 551,259 to 552,365 _0548 Dsui_0549: Dsui_0549 - queuosine biosynthesis protein QueC, at 552,365 to 553,054 _0549 Dsui_0550: Dsui_0550 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifE, at 553,295 to 554,752 _0550 Dsui_0551: Dsui_0551 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, at 554,745 to 556,130 _0551 Position (kb) 553 554 555Strain fitness (log2 ratio) -2 -1 0 1at 552.306 kb on - strandat 552.487 kb on + strandat 552.551 kb on + strand, within Dsui_0549at 552.559 kb on - strand, within Dsui_0549at 552.591 kb on - strand, within Dsui_0549at 552.619 kb on + strandat 552.702 kb on + strandat 552.705 kb on - strand, within Dsui_0549at 552.717 kb on + strandat 552.717 kb on + strandat 552.730 kb on - strand, within Dsui_0549at 552.745 kb on - strand, within Dsui_0549at 552.768 kb on - strand, within Dsui_0549at 552.808 kb on + strand, within Dsui_0549at 552.862 kb on - strandat 552.955 kb on + strandat 553.058 kb on - strandat 553.068 kb on - strandat 553.114 kb on + strandat 553.192 kb on + strandat 553.219 kb on + strandat 553.219 kb on + strandat 553.227 kb on - strandat 553.229 kb on + strandat 553.231 kb on + strandat 553.357 kb on + strandat 553.363 kb on + strandat 553.418 kb on + strandat 553.481 kb on + strand, within Dsui_0550at 553.595 kb on - strand, within Dsui_0550at 553.598 kb on + strand, within Dsui_0550at 553.606 kb on - strand, within Dsui_0550at 553.606 kb on - strand, within Dsui_0550at 553.711 kb on + strand, within Dsui_0550at 553.723 kb on + strand, within Dsui_0550at 553.731 kb on - strand, within Dsui_0550at 553.804 kb on - strand, within Dsui_0550at 553.810 kb on + strand, within Dsui_0550at 553.861 kb on + strand, within Dsui_0550at 553.878 kb on + strand, within Dsui_0550at 553.886 kb on - strand, within Dsui_0550at 554.048 kb on - strandat 554.159 kb on - strand, within Dsui_0550at 554.205 kb on - strandat 554.305 kb on + strand, within Dsui_0550at 554.445 kb on + strand, within Dsui_0550at 554.527 kb on + strand, within Dsui_0550at 554.626 kb on + strandat 554.634 kb on - strandat 554.672 kb on - strandat 554.679 kb on + strandat 554.687 kb on - strandat 554.749 kb on - strandat 554.817 kb on + strandat 554.870 kb on + strandat 554.889 kb on - strand, within Dsui_0551at 554.980 kb on + strand, within Dsui_0551at 555.068 kb on - strand, within Dsui_0551at 555.085 kb on - strand, within Dsui_0551at 555.150 kb on - strand, within Dsui_0551at 555.155 kb on - strand, within Dsui_0551at 555.176 kb on - strand, within Dsui_0551at 555.185 kb on - strandat 555.248 kb on + strand, within Dsui_0551at 555.358 kb on - strand, within Dsui_0551at 555.484 kb on + strandat 555.507 kb on + strandat 555.533 kb on + strand, within Dsui_0551at 555.578 kb on - strand, within Dsui_0551at 555.640 kb on - strand, within Dsui_0551

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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552,306 - +0.0
552,487 + +0.7
552,551 + Dsui_0549 0.27 -1.3
552,559 - Dsui_0549 0.28 -2.4
552,591 - Dsui_0549 0.33 -1.3
552,619 + -0.3
552,702 + +0.7
552,705 - Dsui_0549 0.49 -0.1
552,717 + -0.9
552,717 + +0.7
552,730 - Dsui_0549 0.53 -0.7
552,745 - Dsui_0549 0.55 +0.1
552,768 - Dsui_0549 0.58 -0.8
552,808 + Dsui_0549 0.64 +0.7
552,862 - -1.3
552,955 + -0.3
553,058 - -0.4
553,068 - -0.6
553,114 + -1.6
553,192 + +0.7
553,219 + +0.7
553,219 + -0.3
553,227 - +0.7
553,229 + -0.3
553,231 + -2.6
553,357 + +0.7
553,363 + +0.7
553,418 + +0.7
553,481 + Dsui_0550 0.13 -0.9
553,595 - Dsui_0550 0.21 -0.3
553,598 + Dsui_0550 0.21 -1.6
553,606 - Dsui_0550 0.21 -0.3
553,606 - Dsui_0550 0.21 -2.1
553,711 + Dsui_0550 0.29 -0.3
553,723 + Dsui_0550 0.29 -0.3
553,731 - Dsui_0550 0.30 +0.7
553,804 - Dsui_0550 0.35 -0.9
553,810 + Dsui_0550 0.35 -0.3
553,861 + Dsui_0550 0.39 +0.7
553,878 + Dsui_0550 0.40 -1.3
553,886 - Dsui_0550 0.41 -0.9
554,048 - +0.7
554,159 - Dsui_0550 0.59 -0.9
554,205 - +0.7
554,305 + Dsui_0550 0.69 -0.3
554,445 + Dsui_0550 0.79 +0.7
554,527 + Dsui_0550 0.84 +0.7
554,626 + -0.9
554,634 - -0.3
554,672 - -0.3
554,679 + -0.3
554,687 - -0.3
554,749 - +0.7
554,817 + -1.3
554,870 + -0.9
554,889 - Dsui_0551 0.10 -0.9
554,980 + Dsui_0551 0.17 +0.7
555,068 - Dsui_0551 0.23 -0.3
555,085 - Dsui_0551 0.25 -0.3
555,150 - Dsui_0551 0.29 -0.3
555,155 - Dsui_0551 0.30 +0.7
555,176 - Dsui_0551 0.31 +0.7
555,185 - +0.7
555,248 + Dsui_0551 0.36 -0.9
555,358 - Dsui_0551 0.44 +0.7
555,484 + +0.7
555,507 + +0.7
555,533 + Dsui_0551 0.57 -0.3
555,578 - Dsui_0551 0.60 +0.7
555,640 - Dsui_0551 0.65 +0.7

Or see this region's nucleotide sequence