Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0520 and Dsui_0521 are separated by 75 nucleotides Dsui_0521 and Dsui_0522 are separated by 94 nucleotides
Dsui_0520: Dsui_0520 - transcriptional regulator, at 527,564 to 528,220
_0520
Dsui_0521: Dsui_0521 - enoyl-CoA hydratase/carnithine racemase, at 528,296 to 529,072
_0521
Dsui_0522: Dsui_0522 - SSS sodium solute transporter, at 529,167 to 530,840
_0522
Position (kb) 528
529
530 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 527.302 kb on - strand at 527.511 kb on - strand at 527.563 kb on + strand at 527.674 kb on + strand, within Dsui_0520 at 527.720 kb on + strand, within Dsui_0520 at 527.754 kb on + strand, within Dsui_0520 at 527.791 kb on + strand, within Dsui_0520 at 527.791 kb on + strand, within Dsui_0520 at 527.883 kb on + strand, within Dsui_0520 at 527.952 kb on + strand, within Dsui_0520 at 527.953 kb on + strand, within Dsui_0520 at 527.960 kb on - strand, within Dsui_0520 at 527.960 kb on - strand, within Dsui_0520 at 528.101 kb on + strand, within Dsui_0520 at 528.168 kb on - strand at 528.194 kb on + strand at 528.205 kb on + strand at 528.207 kb on - strand at 528.347 kb on - strand at 528.347 kb on - strand at 528.429 kb on + strand, within Dsui_0521 at 528.442 kb on - strand, within Dsui_0521 at 528.530 kb on + strand, within Dsui_0521 at 528.594 kb on + strand, within Dsui_0521 at 528.596 kb on - strand, within Dsui_0521 at 528.599 kb on + strand, within Dsui_0521 at 528.692 kb on + strand, within Dsui_0521 at 528.827 kb on + strand, within Dsui_0521 at 528.846 kb on - strand, within Dsui_0521 at 528.854 kb on + strand, within Dsui_0521 at 528.856 kb on + strand, within Dsui_0521 at 528.940 kb on + strand, within Dsui_0521 at 528.967 kb on - strand, within Dsui_0521 at 528.967 kb on - strand, within Dsui_0521 at 529.045 kb on + strand at 529.055 kb on + strand at 529.123 kb on - strand at 529.200 kb on + strand at 529.200 kb on + strand at 529.247 kb on + strand at 529.296 kb on + strand at 529.304 kb on - strand at 529.306 kb on + strand at 529.319 kb on - strand at 529.348 kb on + strand, within Dsui_0522 at 529.375 kb on + strand, within Dsui_0522 at 529.375 kb on + strand, within Dsui_0522 at 529.375 kb on + strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.383 kb on - strand, within Dsui_0522 at 529.439 kb on + strand, within Dsui_0522 at 529.467 kb on + strand, within Dsui_0522 at 529.481 kb on - strand, within Dsui_0522 at 529.551 kb on + strand, within Dsui_0522 at 529.613 kb on + strand, within Dsui_0522 at 529.632 kb on - strand, within Dsui_0522 at 529.662 kb on - strand, within Dsui_0522 at 529.669 kb on - strand, within Dsui_0522 at 529.681 kb on - strand, within Dsui_0522 at 529.743 kb on - strand, within Dsui_0522 at 529.781 kb on + strand, within Dsui_0522 at 529.819 kb on + strand, within Dsui_0522 at 529.855 kb on + strand, within Dsui_0522 at 529.868 kb on - strand, within Dsui_0522 at 529.873 kb on - strand, within Dsui_0522 at 530.025 kb on + strand, within Dsui_0522 at 530.046 kb on - strand, within Dsui_0522 at 530.046 kb on - strand, within Dsui_0522 at 530.071 kb on + strand, within Dsui_0522
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 527,302 - -0.3 527,511 - +0.7 527,563 + -0.1 527,674 + Dsui_0520 0.17 -2.4 527,720 + Dsui_0520 0.24 -2.3 527,754 + Dsui_0520 0.29 -1.6 527,791 + Dsui_0520 0.35 -2.4 527,791 + Dsui_0520 0.35 -3.4 527,883 + Dsui_0520 0.49 -2.8 527,952 + Dsui_0520 0.59 -2.4 527,953 + Dsui_0520 0.59 -2.3 527,960 - Dsui_0520 0.60 +0.7 527,960 - Dsui_0520 0.60 +0.7 528,101 + Dsui_0520 0.82 -3.5 528,168 - -0.9 528,194 + -0.7 528,205 + -0.2 528,207 - +0.7 528,347 - -2.6 528,347 - -0.3 528,429 + Dsui_0521 0.17 -0.3 528,442 - Dsui_0521 0.19 -0.9 528,530 + Dsui_0521 0.30 +2.3 528,594 + Dsui_0521 0.38 +0.7 528,596 - Dsui_0521 0.39 -0.3 528,599 + Dsui_0521 0.39 -0.0 528,692 + Dsui_0521 0.51 -0.9 528,827 + Dsui_0521 0.68 +0.1 528,846 - Dsui_0521 0.71 -0.3 528,854 + Dsui_0521 0.72 -1.3 528,856 + Dsui_0521 0.72 -1.3 528,940 + Dsui_0521 0.83 -0.9 528,967 - Dsui_0521 0.86 -1.3 528,967 - Dsui_0521 0.86 -0.3 529,045 + -0.6 529,055 + -1.2 529,123 - +0.7 529,200 + -0.3 529,200 + -0.9 529,247 + -2.1 529,296 + -1.3 529,304 - -0.9 529,306 + -0.9 529,319 - +0.4 529,348 + Dsui_0522 0.11 -1.6 529,375 + Dsui_0522 0.12 +0.7 529,375 + Dsui_0522 0.12 -0.3 529,375 + Dsui_0522 0.12 +0.1 529,383 - Dsui_0522 0.13 -1.9 529,383 - Dsui_0522 0.13 -0.9 529,383 - Dsui_0522 0.13 -0.3 529,383 - Dsui_0522 0.13 -0.3 529,383 - Dsui_0522 0.13 +0.7 529,439 + Dsui_0522 0.16 +0.7 529,467 + Dsui_0522 0.18 -2.1 529,481 - Dsui_0522 0.19 -1.9 529,551 + Dsui_0522 0.23 -0.9 529,613 + Dsui_0522 0.27 -1.3 529,632 - Dsui_0522 0.28 -0.9 529,662 - Dsui_0522 0.30 -0.5 529,669 - Dsui_0522 0.30 -0.3 529,681 - Dsui_0522 0.31 -4.0 529,743 - Dsui_0522 0.34 +0.7 529,781 + Dsui_0522 0.37 -0.3 529,819 + Dsui_0522 0.39 -0.3 529,855 + Dsui_0522 0.41 -0.9 529,868 - Dsui_0522 0.42 -0.3 529,873 - Dsui_0522 0.42 +0.7 530,025 + Dsui_0522 0.51 +0.7 530,046 - Dsui_0522 0.53 -1.3 530,046 - Dsui_0522 0.53 -1.3 530,071 + Dsui_0522 0.54 -0.5
Or see this region's nucleotide sequence