Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0506 and Dsui_0507 are separated by 301 nucleotides Dsui_0507 and Dsui_0508 are separated by 1 nucleotides
Dsui_0506: Dsui_0506 - diguanylate cyclase (GGDEF) domain-containing protein, at 508,316 to 510,517
_0506
Dsui_0507: Dsui_0507 - uncharacterized protein involved in formation of periplasmic nitrate reductase, at 510,819 to 511,067
_0507
Dsui_0508: Dsui_0508 - periplasmic nitrate reductase, large subunit, at 511,069 to 513,594
_0508
Position (kb)
510
511
512 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 509.822 kb on - strand, within Dsui_0506 at 509.932 kb on + strand at 509.932 kb on + strand, within Dsui_0506 at 509.932 kb on + strand, within Dsui_0506 at 509.935 kb on - strand, within Dsui_0506 at 509.940 kb on - strand, within Dsui_0506 at 509.980 kb on + strand, within Dsui_0506 at 510.058 kb on - strand, within Dsui_0506 at 510.097 kb on - strand, within Dsui_0506 at 510.134 kb on - strand, within Dsui_0506 at 510.139 kb on + strand, within Dsui_0506 at 510.147 kb on - strand, within Dsui_0506 at 510.282 kb on + strand, within Dsui_0506 at 510.287 kb on + strand at 510.290 kb on - strand, within Dsui_0506 at 510.325 kb on - strand at 510.334 kb on + strand at 510.334 kb on + strand at 510.342 kb on - strand at 510.361 kb on + strand at 510.361 kb on + strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.409 kb on + strand at 510.452 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.600 kb on - strand at 510.644 kb on + strand at 510.659 kb on + strand at 510.699 kb on - strand at 510.699 kb on - strand at 510.754 kb on + strand at 510.762 kb on - strand at 510.762 kb on - strand at 510.773 kb on - strand at 510.847 kb on - strand, within Dsui_0507 at 510.879 kb on + strand, within Dsui_0507 at 510.916 kb on + strand, within Dsui_0507 at 510.979 kb on + strand, within Dsui_0507 at 511.022 kb on - strand, within Dsui_0507 at 511.072 kb on + strand at 511.314 kb on - strand at 511.317 kb on + strand at 511.366 kb on + strand, within Dsui_0508 at 511.430 kb on + strand, within Dsui_0508 at 511.464 kb on + strand, within Dsui_0508 at 511.608 kb on + strand, within Dsui_0508 at 511.623 kb on - strand, within Dsui_0508 at 511.749 kb on - strand, within Dsui_0508 at 511.775 kb on - strand, within Dsui_0508 at 511.900 kb on + strand, within Dsui_0508 at 511.900 kb on + strand, within Dsui_0508 at 511.973 kb on + strand, within Dsui_0508 at 512.005 kb on - strand, within Dsui_0508 at 512.009 kb on - strand, within Dsui_0508 at 512.054 kb on - strand, within Dsui_0508 at 512.054 kb on - strand, within Dsui_0508 at 512.054 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 509,822 - Dsui_0506 0.68 -0.9 509,932 + +0.7 509,932 + Dsui_0506 0.73 -2.8 509,932 + Dsui_0506 0.73 +0.7 509,935 - Dsui_0506 0.74 -0.2 509,940 - Dsui_0506 0.74 +0.4 509,980 + Dsui_0506 0.76 -1.3 510,058 - Dsui_0506 0.79 +0.7 510,097 - Dsui_0506 0.81 -0.8 510,134 - Dsui_0506 0.83 -1.2 510,139 + Dsui_0506 0.83 -1.9 510,147 - Dsui_0506 0.83 +1.7 510,282 + Dsui_0506 0.89 +0.7 510,287 + +0.7 510,290 - Dsui_0506 0.90 -2.5 510,325 - -0.3 510,334 + +0.7 510,334 + +0.7 510,342 - -0.1 510,361 + +0.7 510,361 + -1.1 510,369 - -1.0 510,369 - +0.4 510,369 - +1.7 510,369 - -1.7 510,369 - +0.7 510,409 + -0.3 510,452 + -2.7 510,512 + -2.7 510,512 + -0.3 510,512 + -1.3 510,512 + -0.3 510,600 - -0.3 510,644 + -0.9 510,659 + -0.3 510,699 - +0.1 510,699 - -1.7 510,754 + -1.3 510,762 - -0.9 510,762 - -0.9 510,773 - -0.3 510,847 - Dsui_0507 0.11 -0.9 510,879 + Dsui_0507 0.24 -0.9 510,916 + Dsui_0507 0.39 -0.3 510,979 + Dsui_0507 0.64 +0.7 511,022 - Dsui_0507 0.82 +0.7 511,072 + -1.3 511,314 - -1.3 511,317 + -0.3 511,366 + Dsui_0508 0.12 -2.8 511,430 + Dsui_0508 0.14 -2.1 511,464 + Dsui_0508 0.16 -2.3 511,608 + Dsui_0508 0.21 +0.7 511,623 - Dsui_0508 0.22 -0.3 511,749 - Dsui_0508 0.27 +0.7 511,775 - Dsui_0508 0.28 -0.9 511,900 + Dsui_0508 0.33 -0.3 511,900 + Dsui_0508 0.33 -0.3 511,973 + Dsui_0508 0.36 -0.9 512,005 - Dsui_0508 0.37 -0.3 512,009 - Dsui_0508 0.37 -0.3 512,054 - Dsui_0508 0.39 -0.3 512,054 - Dsui_0508 0.39 -0.9 512,054 - +0.7
Or see this region's nucleotide sequence