Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0381 and Dsui_0382 are separated by 1 nucleotides Dsui_0382 and Dsui_0383 are separated by 123 nucleotides Dsui_0383 and Dsui_0384 are separated by 99 nucleotides
Dsui_0381: Dsui_0381 - signal transduction histidine kinase, at 380,673 to 382,576
_0381
Dsui_0382: Dsui_0382 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 382,578 to 383,228
_0382
Dsui_0383: Dsui_0383 - hypothetical protein, at 383,352 to 383,864
_0383
Dsui_0384: Dsui_0384 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 383,964 to 385,313
_0384
Position (kb)
383
384 Strain fitness (log2 ratio)
-2
-1
0
1 at 382.417 kb on - strand at 382.485 kb on + strand at 382.493 kb on - strand at 382.584 kb on - strand at 382.607 kb on - strand at 382.613 kb on + strand at 382.642 kb on - strand at 382.720 kb on - strand, within Dsui_0382 at 382.725 kb on - strand, within Dsui_0382 at 382.745 kb on + strand, within Dsui_0382 at 382.906 kb on + strand, within Dsui_0382 at 382.914 kb on - strand, within Dsui_0382 at 382.958 kb on + strand, within Dsui_0382 at 382.965 kb on + strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.139 kb on - strand, within Dsui_0382 at 383.175 kb on + strand at 383.175 kb on + strand at 383.183 kb on - strand at 383.183 kb on - strand at 383.238 kb on - strand at 383.271 kb on - strand at 383.281 kb on - strand at 383.321 kb on - strand at 383.350 kb on + strand at 383.354 kb on - strand at 383.358 kb on - strand at 383.413 kb on - strand at 383.432 kb on - strand, within Dsui_0383 at 383.440 kb on + strand, within Dsui_0383 at 383.528 kb on + strand, within Dsui_0383 at 383.543 kb on + strand, within Dsui_0383 at 383.573 kb on - strand, within Dsui_0383 at 383.632 kb on + strand, within Dsui_0383 at 383.640 kb on - strand, within Dsui_0383 at 383.734 kb on - strand, within Dsui_0383 at 383.762 kb on + strand, within Dsui_0383 at 383.770 kb on - strand, within Dsui_0383 at 383.783 kb on + strand, within Dsui_0383 at 383.789 kb on + strand, within Dsui_0383 at 383.789 kb on + strand, within Dsui_0383 at 383.828 kb on + strand at 383.833 kb on + strand at 383.905 kb on - strand at 383.977 kb on + strand at 384.149 kb on - strand, within Dsui_0384 at 384.165 kb on - strand, within Dsui_0384 at 384.293 kb on - strand, within Dsui_0384 at 384.299 kb on + strand, within Dsui_0384 at 384.363 kb on + strand at 384.640 kb on + strand, within Dsui_0384 at 384.823 kb on + strand, within Dsui_0384 at 384.858 kb on - strand, within Dsui_0384
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 382,417 - +0.7 382,485 + -0.9 382,493 - -0.3 382,584 - -0.7 382,607 - -0.6 382,613 + -2.3 382,642 - -0.4 382,720 - Dsui_0382 0.22 -1.0 382,725 - Dsui_0382 0.23 -0.8 382,745 + Dsui_0382 0.26 +0.7 382,906 + Dsui_0382 0.50 -0.3 382,914 - Dsui_0382 0.52 +0.0 382,958 + Dsui_0382 0.58 -0.3 382,965 + Dsui_0382 0.59 +0.7 383,032 - Dsui_0382 0.70 -0.9 383,032 - Dsui_0382 0.70 -0.4 383,139 - Dsui_0382 0.86 -0.0 383,175 + +0.7 383,175 + -2.1 383,183 - -1.2 383,183 - -0.4 383,238 - -1.1 383,271 - +0.7 383,281 - -1.3 383,321 - +0.7 383,350 + -0.0 383,354 - +0.7 383,358 - -1.9 383,413 - +0.7 383,432 - Dsui_0383 0.16 -0.9 383,440 + Dsui_0383 0.17 -0.3 383,528 + Dsui_0383 0.34 -2.3 383,543 + Dsui_0383 0.37 -1.5 383,573 - Dsui_0383 0.43 -0.9 383,632 + Dsui_0383 0.55 -0.3 383,640 - Dsui_0383 0.56 -0.3 383,734 - Dsui_0383 0.74 -0.8 383,762 + Dsui_0383 0.80 -0.7 383,770 - Dsui_0383 0.81 -1.9 383,783 + Dsui_0383 0.84 -0.8 383,789 + Dsui_0383 0.85 -0.7 383,789 + Dsui_0383 0.85 -1.3 383,828 + -0.5 383,833 + -0.5 383,905 - -0.4 383,977 + +0.7 384,149 - Dsui_0384 0.14 +0.4 384,165 - Dsui_0384 0.15 -0.4 384,293 - Dsui_0384 0.24 -0.5 384,299 + Dsui_0384 0.25 -0.9 384,363 + +0.7 384,640 + Dsui_0384 0.50 -1.3 384,823 + Dsui_0384 0.64 -0.9 384,858 - Dsui_0384 0.66 +0.1
Or see this region's nucleotide sequence