Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0380 and Dsui_0381 are separated by 40 nucleotides Dsui_0381 and Dsui_0382 are separated by 1 nucleotides Dsui_0382 and Dsui_0383 are separated by 123 nucleotides
Dsui_0380: Dsui_0380 - hypothetical protein, at 379,820 to 380,632
_0380
Dsui_0381: Dsui_0381 - signal transduction histidine kinase, at 380,673 to 382,576
_0381
Dsui_0382: Dsui_0382 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 382,578 to 383,228
_0382
Dsui_0383: Dsui_0383 - hypothetical protein, at 383,352 to 383,864
_0383
Position (kb)
380
381
382
383 Strain fitness (log2 ratio)
-2
-1
0
1 at 379.690 kb on + strand at 379.704 kb on + strand at 379.773 kb on + strand at 379.884 kb on - strand at 379.893 kb on + strand at 379.942 kb on - strand, within Dsui_0380 at 379.993 kb on - strand at 380.003 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.029 kb on - strand at 380.029 kb on - strand, within Dsui_0380 at 380.029 kb on - strand at 380.029 kb on - strand, within Dsui_0380 at 380.245 kb on - strand, within Dsui_0380 at 380.389 kb on + strand, within Dsui_0380 at 380.397 kb on - strand, within Dsui_0380 at 380.414 kb on + strand, within Dsui_0380 at 380.494 kb on - strand, within Dsui_0380 at 380.551 kb on + strand at 380.846 kb on - strand at 380.901 kb on + strand, within Dsui_0381 at 380.989 kb on - strand at 380.989 kb on - strand, within Dsui_0381 at 381.208 kb on + strand, within Dsui_0381 at 381.216 kb on - strand, within Dsui_0381 at 381.241 kb on + strand, within Dsui_0381 at 381.296 kb on + strand, within Dsui_0381 at 381.386 kb on - strand, within Dsui_0381 at 381.407 kb on - strand, within Dsui_0381 at 381.425 kb on - strand, within Dsui_0381 at 381.476 kb on + strand, within Dsui_0381 at 381.546 kb on + strand, within Dsui_0381 at 381.556 kb on + strand, within Dsui_0381 at 381.556 kb on + strand, within Dsui_0381 at 381.564 kb on - strand, within Dsui_0381 at 381.564 kb on - strand at 381.564 kb on - strand, within Dsui_0381 at 381.634 kb on + strand, within Dsui_0381 at 381.649 kb on + strand, within Dsui_0381 at 381.657 kb on - strand, within Dsui_0381 at 381.671 kb on + strand, within Dsui_0381 at 381.679 kb on - strand, within Dsui_0381 at 381.679 kb on - strand, within Dsui_0381 at 381.693 kb on - strand, within Dsui_0381 at 381.871 kb on - strand at 381.881 kb on + strand at 381.881 kb on + strand, within Dsui_0381 at 381.946 kb on + strand at 381.972 kb on + strand, within Dsui_0381 at 382.031 kb on + strand, within Dsui_0381 at 382.036 kb on + strand, within Dsui_0381 at 382.039 kb on - strand, within Dsui_0381 at 382.078 kb on + strand, within Dsui_0381 at 382.156 kb on - strand, within Dsui_0381 at 382.417 kb on - strand at 382.485 kb on + strand at 382.493 kb on - strand at 382.584 kb on - strand at 382.607 kb on - strand at 382.613 kb on + strand at 382.642 kb on - strand at 382.720 kb on - strand, within Dsui_0382 at 382.725 kb on - strand, within Dsui_0382 at 382.745 kb on + strand, within Dsui_0382 at 382.906 kb on + strand, within Dsui_0382 at 382.914 kb on - strand, within Dsui_0382 at 382.958 kb on + strand, within Dsui_0382 at 382.965 kb on + strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.139 kb on - strand, within Dsui_0382 at 383.175 kb on + strand at 383.175 kb on + strand at 383.183 kb on - strand at 383.183 kb on - strand at 383.238 kb on - strand at 383.271 kb on - strand at 383.281 kb on - strand at 383.321 kb on - strand at 383.350 kb on + strand at 383.354 kb on - strand at 383.358 kb on - strand at 383.413 kb on - strand at 383.432 kb on - strand, within Dsui_0383 at 383.440 kb on + strand, within Dsui_0383 at 383.528 kb on + strand, within Dsui_0383 at 383.543 kb on + strand, within Dsui_0383 at 383.573 kb on - strand, within Dsui_0383
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 379,690 + +0.7 379,704 + +0.7 379,773 + +0.7 379,884 - -0.3 379,893 + -1.3 379,942 - Dsui_0380 0.15 -2.1 379,993 - +0.7 380,003 + Dsui_0380 0.23 -0.7 380,021 + Dsui_0380 0.25 -0.3 380,021 + Dsui_0380 0.25 -0.5 380,021 + Dsui_0380 0.25 -0.6 380,021 + Dsui_0380 0.25 -1.5 380,021 + Dsui_0380 0.25 -1.4 380,029 - +0.7 380,029 - Dsui_0380 0.26 -2.5 380,029 - +0.7 380,029 - Dsui_0380 0.26 +0.7 380,245 - Dsui_0380 0.52 -0.9 380,389 + Dsui_0380 0.70 -0.9 380,397 - Dsui_0380 0.71 +0.7 380,414 + Dsui_0380 0.73 +0.7 380,494 - Dsui_0380 0.83 +0.7 380,551 + +0.3 380,846 - -0.3 380,901 + Dsui_0381 0.12 -0.6 380,989 - +0.7 380,989 - Dsui_0381 0.17 +0.7 381,208 + Dsui_0381 0.28 -2.2 381,216 - Dsui_0381 0.29 -0.3 381,241 + Dsui_0381 0.30 -0.9 381,296 + Dsui_0381 0.33 -0.5 381,386 - Dsui_0381 0.37 -1.3 381,407 - Dsui_0381 0.39 -0.3 381,425 - Dsui_0381 0.39 +0.7 381,476 + Dsui_0381 0.42 -0.1 381,546 + Dsui_0381 0.46 +0.1 381,556 + Dsui_0381 0.46 -2.1 381,556 + Dsui_0381 0.46 -0.2 381,564 - Dsui_0381 0.47 -1.3 381,564 - +0.7 381,564 - Dsui_0381 0.47 -0.3 381,634 + Dsui_0381 0.50 -0.3 381,649 + Dsui_0381 0.51 -0.2 381,657 - Dsui_0381 0.52 -1.6 381,671 + Dsui_0381 0.52 -0.4 381,679 - Dsui_0381 0.53 -0.3 381,679 - Dsui_0381 0.53 -0.9 381,693 - Dsui_0381 0.54 -0.9 381,871 - +0.7 381,881 + -0.9 381,881 + Dsui_0381 0.63 -1.1 381,946 + +0.7 381,972 + Dsui_0381 0.68 -0.5 382,031 + Dsui_0381 0.71 -1.1 382,036 + Dsui_0381 0.72 +0.7 382,039 - Dsui_0381 0.72 +0.7 382,078 + Dsui_0381 0.74 -0.3 382,156 - Dsui_0381 0.78 -2.6 382,417 - +0.7 382,485 + -0.9 382,493 - -0.3 382,584 - -0.7 382,607 - -0.6 382,613 + -2.3 382,642 - -0.4 382,720 - Dsui_0382 0.22 -1.0 382,725 - Dsui_0382 0.23 -0.8 382,745 + Dsui_0382 0.26 +0.7 382,906 + Dsui_0382 0.50 -0.3 382,914 - Dsui_0382 0.52 +0.0 382,958 + Dsui_0382 0.58 -0.3 382,965 + Dsui_0382 0.59 +0.7 383,032 - Dsui_0382 0.70 -0.9 383,032 - Dsui_0382 0.70 -0.4 383,139 - Dsui_0382 0.86 -0.0 383,175 + +0.7 383,175 + -2.1 383,183 - -1.2 383,183 - -0.4 383,238 - -1.1 383,271 - +0.7 383,281 - -1.3 383,321 - +0.7 383,350 + -0.0 383,354 - +0.7 383,358 - -1.9 383,413 - +0.7 383,432 - Dsui_0383 0.16 -0.9 383,440 + Dsui_0383 0.17 -0.3 383,528 + Dsui_0383 0.34 -2.3 383,543 + Dsui_0383 0.37 -1.5 383,573 - Dsui_0383 0.43 -0.9
Or see this region's nucleotide sequence