Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0379 and Dsui_0380 are separated by 270 nucleotides Dsui_0380 and Dsui_0381 are separated by 40 nucleotides
Dsui_0379: Dsui_0379 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 375,998 to 379,549
_0379
Dsui_0380: Dsui_0380 - hypothetical protein, at 379,820 to 380,632
_0380
Dsui_0381: Dsui_0381 - signal transduction histidine kinase, at 380,673 to 382,576
_0381
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1 at 378.949 kb on - strand, within Dsui_0379 at 379.000 kb on + strand, within Dsui_0379 at 379.068 kb on + strand, within Dsui_0379 at 379.126 kb on - strand at 379.180 kb on + strand, within Dsui_0379 at 379.191 kb on + strand, within Dsui_0379 at 379.191 kb on + strand, within Dsui_0379 at 379.233 kb on - strand at 379.243 kb on - strand at 379.292 kb on + strand at 379.292 kb on + strand at 379.361 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.543 kb on + strand at 379.565 kb on - strand at 379.690 kb on + strand at 379.704 kb on + strand at 379.773 kb on + strand at 379.884 kb on - strand at 379.893 kb on + strand at 379.942 kb on - strand, within Dsui_0380 at 379.993 kb on - strand at 380.003 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.021 kb on + strand, within Dsui_0380 at 380.029 kb on - strand at 380.029 kb on - strand, within Dsui_0380 at 380.029 kb on - strand at 380.029 kb on - strand, within Dsui_0380 at 380.245 kb on - strand, within Dsui_0380 at 380.389 kb on + strand, within Dsui_0380 at 380.397 kb on - strand, within Dsui_0380 at 380.414 kb on + strand, within Dsui_0380 at 380.494 kb on - strand, within Dsui_0380 at 380.551 kb on + strand at 380.846 kb on - strand at 380.901 kb on + strand, within Dsui_0381 at 380.989 kb on - strand at 380.989 kb on - strand, within Dsui_0381 at 381.208 kb on + strand, within Dsui_0381 at 381.216 kb on - strand, within Dsui_0381 at 381.241 kb on + strand, within Dsui_0381 at 381.296 kb on + strand, within Dsui_0381 at 381.386 kb on - strand, within Dsui_0381 at 381.407 kb on - strand, within Dsui_0381 at 381.425 kb on - strand, within Dsui_0381 at 381.476 kb on + strand, within Dsui_0381 at 381.546 kb on + strand, within Dsui_0381 at 381.556 kb on + strand, within Dsui_0381 at 381.556 kb on + strand, within Dsui_0381 at 381.564 kb on - strand, within Dsui_0381 at 381.564 kb on - strand at 381.564 kb on - strand, within Dsui_0381
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 378,949 - Dsui_0379 0.83 -0.9 379,000 + Dsui_0379 0.85 -0.9 379,068 + Dsui_0379 0.86 -1.3 379,126 - +0.7 379,180 + Dsui_0379 0.90 +0.7 379,191 + Dsui_0379 0.90 -2.5 379,191 + Dsui_0379 0.90 -0.3 379,233 - -0.9 379,243 - -1.6 379,292 + +0.7 379,292 + -0.3 379,361 + +0.7 379,543 + -0.3 379,543 + +0.7 379,543 + +0.7 379,543 + +0.7 379,543 + -2.5 379,543 + -0.9 379,543 + -0.3 379,543 + -1.3 379,543 + -1.3 379,565 - +0.3 379,690 + +0.7 379,704 + +0.7 379,773 + +0.7 379,884 - -0.3 379,893 + -1.3 379,942 - Dsui_0380 0.15 -2.1 379,993 - +0.7 380,003 + Dsui_0380 0.23 -0.7 380,021 + Dsui_0380 0.25 -0.3 380,021 + Dsui_0380 0.25 -0.5 380,021 + Dsui_0380 0.25 -0.6 380,021 + Dsui_0380 0.25 -1.5 380,021 + Dsui_0380 0.25 -1.4 380,029 - +0.7 380,029 - Dsui_0380 0.26 -2.5 380,029 - +0.7 380,029 - Dsui_0380 0.26 +0.7 380,245 - Dsui_0380 0.52 -0.9 380,389 + Dsui_0380 0.70 -0.9 380,397 - Dsui_0380 0.71 +0.7 380,414 + Dsui_0380 0.73 +0.7 380,494 - Dsui_0380 0.83 +0.7 380,551 + +0.3 380,846 - -0.3 380,901 + Dsui_0381 0.12 -0.6 380,989 - +0.7 380,989 - Dsui_0381 0.17 +0.7 381,208 + Dsui_0381 0.28 -2.2 381,216 - Dsui_0381 0.29 -0.3 381,241 + Dsui_0381 0.30 -0.9 381,296 + Dsui_0381 0.33 -0.5 381,386 - Dsui_0381 0.37 -1.3 381,407 - Dsui_0381 0.39 -0.3 381,425 - Dsui_0381 0.39 +0.7 381,476 + Dsui_0381 0.42 -0.1 381,546 + Dsui_0381 0.46 +0.1 381,556 + Dsui_0381 0.46 -2.1 381,556 + Dsui_0381 0.46 -0.2 381,564 - Dsui_0381 0.47 -1.3 381,564 - +0.7 381,564 - Dsui_0381 0.47 -0.3
Or see this region's nucleotide sequence