Strain Fitness in Dechlorosoma suillum PS around Dsui_0321

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0320 and Dsui_0321 are separated by 161 nucleotidesDsui_0321 and Dsui_0322 are separated by 63 nucleotidesDsui_0322 and Dsui_0323 overlap by 8 nucleotides Dsui_0320: Dsui_0320 - DNA-binding domain-containing protein, AraC-type, at 323,950 to 324,957 _0320 Dsui_0321: Dsui_0321 - long-chain fatty acid transport protein, at 325,119 to 326,417 _0321 Dsui_0322: Dsui_0322 - acyl-CoA hydrolase, at 326,481 to 326,879 _0322 Dsui_0323: Dsui_0323 - 3-hydroxyacyl-CoA dehydrogenase, at 326,872 to 328,809 _0323 Position (kb) 325 326 327Strain fitness (log2 ratio) -2 -1 0 1at 324.178 kb on + strand, within Dsui_0320at 324.206 kb on + strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.231 kb on + strand, within Dsui_0320at 324.231 kb on + strand, within Dsui_0320at 324.241 kb on + strand, within Dsui_0320at 324.249 kb on - strand, within Dsui_0320at 324.249 kb on - strand, within Dsui_0320at 324.258 kb on - strand, within Dsui_0320at 324.373 kb on - strand, within Dsui_0320at 324.383 kb on + strand, within Dsui_0320at 324.396 kb on - strand, within Dsui_0320at 324.407 kb on + strand, within Dsui_0320at 324.436 kb on - strand, within Dsui_0320at 324.475 kb on + strand, within Dsui_0320at 324.497 kb on + strand, within Dsui_0320at 324.610 kb on + strand, within Dsui_0320at 324.627 kb on + strand, within Dsui_0320at 324.656 kb on + strand, within Dsui_0320at 324.684 kb on - strand, within Dsui_0320at 324.704 kb on - strand, within Dsui_0320at 324.741 kb on + strand, within Dsui_0320at 324.750 kb on + strand, within Dsui_0320at 324.754 kb on - strand, within Dsui_0320at 324.779 kb on - strand, within Dsui_0320at 324.787 kb on - strand, within Dsui_0320at 324.866 kb on - strandat 324.868 kb on + strandat 324.871 kb on - strandat 324.924 kb on + strandat 325.062 kb on - strandat 325.125 kb on - strandat 325.144 kb on + strandat 325.159 kb on - strandat 325.204 kb on + strandat 325.217 kb on - strandat 325.236 kb on - strandat 325.239 kb on + strandat 325.246 kb on - strandat 325.288 kb on - strand, within Dsui_0321at 325.289 kb on + strand, within Dsui_0321at 325.292 kb on + strand, within Dsui_0321at 325.297 kb on + strand, within Dsui_0321at 325.308 kb on - strand, within Dsui_0321at 325.336 kb on - strand, within Dsui_0321at 325.456 kb on + strand, within Dsui_0321at 325.499 kb on + strandat 325.499 kb on + strand, within Dsui_0321at 325.508 kb on + strand, within Dsui_0321at 325.570 kb on - strand, within Dsui_0321at 325.581 kb on - strand, within Dsui_0321at 325.596 kb on - strand, within Dsui_0321at 325.603 kb on + strand, within Dsui_0321at 325.700 kb on - strand, within Dsui_0321at 325.714 kb on - strand, within Dsui_0321at 325.778 kb on + strand, within Dsui_0321at 325.859 kb on - strand, within Dsui_0321at 325.898 kb on - strand, within Dsui_0321at 325.917 kb on - strand, within Dsui_0321at 325.950 kb on - strand, within Dsui_0321at 326.004 kb on + strand, within Dsui_0321at 326.009 kb on + strand, within Dsui_0321at 326.012 kb on - strand, within Dsui_0321at 326.034 kb on + strand, within Dsui_0321at 326.187 kb on - strand, within Dsui_0321at 326.194 kb on + strand, within Dsui_0321at 326.199 kb on + strand, within Dsui_0321at 326.261 kb on + strand, within Dsui_0321at 326.303 kb on - strandat 326.359 kb on + strandat 326.397 kb on + strandat 326.405 kb on - strandat 326.460 kb on - strandat 326.597 kb on + strand, within Dsui_0322at 326.603 kb on - strand, within Dsui_0322at 326.605 kb on - strand, within Dsui_0322at 326.605 kb on - strand, within Dsui_0322at 326.611 kb on - strand, within Dsui_0322at 326.769 kb on + strand, within Dsui_0322at 326.839 kb on - strand, within Dsui_0322at 327.040 kb on + strandat 327.064 kb on + strandat 327.167 kb on - strand, within Dsui_0323at 327.228 kb on + strand, within Dsui_0323at 327.256 kb on + strand, within Dsui_0323at 327.292 kb on + strand, within Dsui_0323at 327.341 kb on + strand, within Dsui_0323at 327.412 kb on + strandat 327.414 kb on - strand, within Dsui_0323

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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324,178 + Dsui_0320 0.23 -0.2
324,206 + Dsui_0320 0.25 -0.4
324,214 - Dsui_0320 0.26 +0.8
324,214 - Dsui_0320 0.26 -2.7
324,214 - Dsui_0320 0.26 -1.6
324,214 - Dsui_0320 0.26 +0.8
324,231 + Dsui_0320 0.28 -0.4
324,231 + Dsui_0320 0.28 -0.0
324,241 + Dsui_0320 0.29 -0.0
324,249 - Dsui_0320 0.30 +0.8
324,249 - Dsui_0320 0.30 -1.2
324,258 - Dsui_0320 0.31 -0.2
324,373 - Dsui_0320 0.42 -1.8
324,383 + Dsui_0320 0.43 +0.1
324,396 - Dsui_0320 0.44 -1.6
324,407 + Dsui_0320 0.45 -0.2
324,436 - Dsui_0320 0.48 -1.6
324,475 + Dsui_0320 0.52 -1.5
324,497 + Dsui_0320 0.54 +0.1
324,610 + Dsui_0320 0.65 -0.1
324,627 + Dsui_0320 0.67 -0.2
324,656 + Dsui_0320 0.70 -0.1
324,684 - Dsui_0320 0.73 +0.8
324,704 - Dsui_0320 0.75 -0.2
324,741 + Dsui_0320 0.78 +0.2
324,750 + Dsui_0320 0.79 -0.2
324,754 - Dsui_0320 0.80 -1.2
324,779 - Dsui_0320 0.82 -0.8
324,787 - Dsui_0320 0.83 -1.2
324,866 - +0.2
324,868 + -0.1
324,871 - -1.2
324,924 + +0.2
325,062 - +0.8
325,125 - +0.4
325,144 + -0.8
325,159 - -0.1
325,204 + -0.2
325,217 - -0.5
325,236 - +0.1
325,239 + +0.2
325,246 - +0.4
325,288 - Dsui_0321 0.13 -0.2
325,289 + Dsui_0321 0.13 -1.6
325,292 + Dsui_0321 0.13 -0.2
325,297 + Dsui_0321 0.14 +0.8
325,308 - Dsui_0321 0.15 -0.1
325,336 - Dsui_0321 0.17 -0.6
325,456 + Dsui_0321 0.26 -2.1
325,499 + +0.8
325,499 + Dsui_0321 0.29 +0.8
325,508 + Dsui_0321 0.30 +0.8
325,570 - Dsui_0321 0.35 -0.9
325,581 - Dsui_0321 0.36 -0.1
325,596 - Dsui_0321 0.37 -0.5
325,603 + Dsui_0321 0.37 -1.6
325,700 - Dsui_0321 0.45 -0.5
325,714 - Dsui_0321 0.46 +0.9
325,778 + Dsui_0321 0.51 -1.6
325,859 - Dsui_0321 0.57 -0.1
325,898 - Dsui_0321 0.60 -0.8
325,917 - Dsui_0321 0.61 -0.4
325,950 - Dsui_0321 0.64 +0.1
326,004 + Dsui_0321 0.68 -1.6
326,009 + Dsui_0321 0.69 -0.8
326,012 - Dsui_0321 0.69 +0.6
326,034 + Dsui_0321 0.70 -0.2
326,187 - Dsui_0321 0.82 +0.4
326,194 + Dsui_0321 0.83 +0.8
326,199 + Dsui_0321 0.83 +0.8
326,261 + Dsui_0321 0.88 -0.8
326,303 - +0.1
326,359 + -0.8
326,397 + +0.0
326,405 - -0.7
326,460 - +0.2
326,597 + Dsui_0322 0.29 +0.8
326,603 - Dsui_0322 0.31 -0.1
326,605 - Dsui_0322 0.31 +0.0
326,605 - Dsui_0322 0.31 -0.7
326,611 - Dsui_0322 0.33 -0.2
326,769 + Dsui_0322 0.72 +0.8
326,839 - Dsui_0322 0.90 -0.0
327,040 + +0.8
327,064 + -1.6
327,167 - Dsui_0323 0.15 +0.2
327,228 + Dsui_0323 0.18 -0.2
327,256 + Dsui_0323 0.20 +0.8
327,292 + Dsui_0323 0.22 -0.8
327,341 + Dsui_0323 0.24 +0.8
327,412 + +0.8
327,414 - Dsui_0323 0.28 +0.3

Or see this region's nucleotide sequence