Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0294 and Dsui_0295 are separated by 19 nucleotides Dsui_0295 and Dsui_0296 overlap by 4 nucleotides
Dsui_0294: Dsui_0294 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 293,409 to 294,920
_0294
Dsui_0295: Dsui_0295 - hypothetical protein, at 294,940 to 297,729
_0295
Dsui_0296: Dsui_0296 - hypothetical protein, at 297,726 to 298,508
_0296
Position (kb) 294
295
296
297
298 Strain fitness (log2 ratio) -2
-1
0
1 at 293.974 kb on + strand at 294.021 kb on + strand, within Dsui_0294 at 294.043 kb on + strand at 294.053 kb on + strand, within Dsui_0294 at 294.200 kb on - strand at 294.268 kb on - strand, within Dsui_0294 at 294.324 kb on + strand, within Dsui_0294 at 294.332 kb on - strand at 294.339 kb on + strand, within Dsui_0294 at 294.512 kb on + strand, within Dsui_0294 at 294.514 kb on + strand, within Dsui_0294 at 294.557 kb on + strand, within Dsui_0294 at 294.577 kb on - strand, within Dsui_0294 at 294.599 kb on + strand, within Dsui_0294 at 294.619 kb on + strand, within Dsui_0294 at 294.719 kb on + strand, within Dsui_0294 at 294.727 kb on - strand at 295.053 kb on + strand at 295.079 kb on + strand at 295.112 kb on + strand at 295.120 kb on - strand at 295.122 kb on + strand at 295.144 kb on - strand at 295.154 kb on - strand at 295.177 kb on + strand at 295.190 kb on + strand at 295.201 kb on + strand at 295.209 kb on - strand at 295.309 kb on + strand at 295.345 kb on + strand, within Dsui_0295 at 295.350 kb on + strand, within Dsui_0295 at 295.381 kb on - strand at 295.418 kb on - strand at 295.455 kb on - strand at 295.472 kb on - strand, within Dsui_0295 at 295.472 kb on - strand, within Dsui_0295 at 295.581 kb on - strand at 295.731 kb on + strand at 295.739 kb on - strand, within Dsui_0295 at 295.776 kb on + strand, within Dsui_0295 at 295.826 kb on - strand at 295.869 kb on - strand, within Dsui_0295 at 295.885 kb on + strand, within Dsui_0295 at 295.913 kb on - strand at 295.987 kb on - strand, within Dsui_0295 at 295.992 kb on + strand at 296.010 kb on - strand at 296.087 kb on - strand at 296.473 kb on - strand, within Dsui_0295 at 296.896 kb on + strand at 296.898 kb on - strand, within Dsui_0295 at 297.308 kb on + strand at 297.400 kb on - strand at 297.480 kb on + strand at 297.516 kb on + strand at 297.618 kb on - strand at 297.767 kb on + strand at 297.801 kb on + strand at 297.868 kb on - strand at 297.879 kb on + strand, within Dsui_0296 at 298.136 kb on - strand at 298.141 kb on - strand, within Dsui_0296 at 298.146 kb on - strand, within Dsui_0296 at 298.416 kb on - strand at 298.452 kb on + strand at 298.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 293,974 + +0.7 294,021 + Dsui_0294 0.40 +0.7 294,043 + -0.3 294,053 + Dsui_0294 0.43 -0.3 294,200 - -0.3 294,268 - Dsui_0294 0.57 -1.9 294,324 + Dsui_0294 0.61 +0.7 294,332 - -0.3 294,339 + Dsui_0294 0.62 -0.9 294,512 + Dsui_0294 0.73 +0.0 294,514 + Dsui_0294 0.73 -1.3 294,557 + Dsui_0294 0.76 +0.7 294,577 - Dsui_0294 0.77 +1.7 294,599 + Dsui_0294 0.79 -1.6 294,619 + Dsui_0294 0.80 -0.6 294,719 + Dsui_0294 0.87 -0.6 294,727 - +0.7 295,053 + -2.3 295,079 + -1.3 295,112 + -1.6 295,120 - -0.9 295,122 + +0.7 295,144 - +0.7 295,154 - +0.7 295,177 + +0.7 295,190 + -1.6 295,201 + +0.7 295,209 - -0.3 295,309 + -0.3 295,345 + Dsui_0295 0.15 -0.3 295,350 + Dsui_0295 0.15 -0.3 295,381 - +0.7 295,418 - -0.3 295,455 - +0.7 295,472 - Dsui_0295 0.19 -1.3 295,472 - Dsui_0295 0.19 -1.9 295,581 - -0.3 295,731 + -0.3 295,739 - Dsui_0295 0.29 +0.7 295,776 + Dsui_0295 0.30 -0.7 295,826 - +0.7 295,869 - Dsui_0295 0.33 -0.3 295,885 + Dsui_0295 0.34 -0.3 295,913 - +0.7 295,987 - Dsui_0295 0.38 -1.9 295,992 + +0.7 296,010 - -0.9 296,087 - +0.7 296,473 - Dsui_0295 0.55 -2.6 296,896 + +0.7 296,898 - Dsui_0295 0.70 -0.3 297,308 + +0.7 297,400 - +0.7 297,480 + -0.3 297,516 + -0.3 297,618 - -0.9 297,767 + -0.3 297,801 + -0.9 297,868 - -0.3 297,879 + Dsui_0296 0.20 -1.3 298,136 - -0.3 298,141 - Dsui_0296 0.53 -1.6 298,146 - Dsui_0296 0.54 -0.3 298,416 - +0.7 298,452 + -0.3 298,517 + -1.6
Or see this region's nucleotide sequence