Strain Fitness in Dechlorosoma suillum PS around Dsui_0233

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0232 and Dsui_0233 are separated by 66 nucleotidesDsui_0233 and Dsui_0234 are separated by 36 nucleotidesDsui_0234 and Dsui_0235 are separated by 15 nucleotides Dsui_0232: Dsui_0232 - cell division protein FtsZ, at 230,054 to 231,205 _0232 Dsui_0233: Dsui_0233 - cell division protein FtsA, at 231,272 to 232,501 _0233 Dsui_0234: Dsui_0234 - cell division septal protein, at 232,538 to 233,272 _0234 Dsui_0235: Dsui_0235 - D-alanine--D-alanine ligase, at 233,288 to 234,208 _0235 Position (kb) 231 232 233Strain fitness (log2 ratio) -1 0 1at 231.245 kb on + strandat 231.245 kb on + strandat 231.245 kb on + strandat 231.253 kb on - strandat 231.268 kb on - strandat 232.530 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
remove
231,245 + +0.8
231,245 + +0.8
231,245 + -0.2
231,253 - +0.1
231,268 - +0.8
232,530 - +0.2

Or see this region's nucleotide sequence