Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0222 and Dsui_0223 are separated by 7 nucleotides Dsui_0223 and Dsui_0224 are separated by 9 nucleotides Dsui_0224 and Dsui_0225 are separated by 280 nucleotides Dsui_0225 and Dsui_0226 are separated by 144 nucleotides
Dsui_0222: Dsui_0222 - uncharacterized protein affecting Mg2+/Co2+ transport, at 220,676 to 221,059
_0222
Dsui_0223: Dsui_0223 - methylase involved in ubiquinone/menaquinone biosynthesis, at 221,067 to 221,660
_0223
Dsui_0224: Dsui_0224 - transcriptional regulator, at 221,670 to 222,575
_0224
Dsui_0225: Dsui_0225 - hypothetical protein, at 222,856 to 222,999
_0225
Dsui_0226: Dsui_0226 - glutamate N-acetyltransferase/amino-acid acetyltransferase, at 223,144 to 224,385
_0226
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 220.731 kb on - strand, within Dsui_0222 at 220.782 kb on - strand, within Dsui_0222 at 220.865 kb on + strand, within Dsui_0222 at 220.977 kb on + strand, within Dsui_0222 at 221.013 kb on - strand, within Dsui_0222 at 221.083 kb on + strand at 221.091 kb on - strand at 221.096 kb on - strand at 221.165 kb on + strand, within Dsui_0223 at 221.368 kb on + strand, within Dsui_0223 at 221.384 kb on + strand, within Dsui_0223 at 221.411 kb on + strand, within Dsui_0223 at 221.431 kb on + strand, within Dsui_0223 at 221.499 kb on + strand, within Dsui_0223 at 221.520 kb on + strand, within Dsui_0223 at 221.589 kb on - strand, within Dsui_0223 at 221.732 kb on - strand at 221.804 kb on + strand, within Dsui_0224 at 221.863 kb on - strand, within Dsui_0224 at 221.990 kb on - strand, within Dsui_0224 at 222.005 kb on - strand, within Dsui_0224 at 222.060 kb on + strand, within Dsui_0224 at 222.067 kb on - strand, within Dsui_0224 at 222.182 kb on + strand, within Dsui_0224 at 222.190 kb on - strand, within Dsui_0224 at 222.221 kb on - strand, within Dsui_0224 at 222.256 kb on + strand, within Dsui_0224 at 222.301 kb on - strand at 222.411 kb on + strand, within Dsui_0224 at 222.426 kb on - strand, within Dsui_0224 at 222.437 kb on + strand, within Dsui_0224 at 222.504 kb on + strand at 222.570 kb on + strand at 222.626 kb on - strand at 222.626 kb on - strand at 222.720 kb on + strand at 222.726 kb on + strand at 222.728 kb on - strand at 222.772 kb on - strand at 222.778 kb on + strand at 222.778 kb on + strand at 222.786 kb on - strand at 222.793 kb on + strand at 222.929 kb on + strand, within Dsui_0225 at 222.932 kb on + strand, within Dsui_0225 at 222.948 kb on - strand, within Dsui_0225 at 222.954 kb on + strand, within Dsui_0225 at 222.954 kb on + strand, within Dsui_0225 at 222.954 kb on + strand, within Dsui_0225 at 222.962 kb on - strand, within Dsui_0225 at 222.962 kb on - strand, within Dsui_0225 at 222.996 kb on - strand at 223.006 kb on - strand at 223.019 kb on - strand at 223.068 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 220,731 - Dsui_0222 0.14 +0.8 220,782 - Dsui_0222 0.28 -1.2 220,865 + Dsui_0222 0.49 -0.2 220,977 + Dsui_0222 0.78 -0.1 221,013 - Dsui_0222 0.88 -2.3 221,083 + -0.1 221,091 - +0.8 221,096 - -1.2 221,165 + Dsui_0223 0.16 +0.2 221,368 + Dsui_0223 0.51 +0.0 221,384 + Dsui_0223 0.53 -0.1 221,411 + Dsui_0223 0.58 -0.1 221,431 + Dsui_0223 0.61 -0.0 221,499 + Dsui_0223 0.73 -0.9 221,520 + Dsui_0223 0.76 -0.9 221,589 - Dsui_0223 0.88 -1.3 221,732 - -1.6 221,804 + Dsui_0224 0.15 -0.0 221,863 - Dsui_0224 0.21 +0.8 221,990 - Dsui_0224 0.35 -0.8 222,005 - Dsui_0224 0.37 -1.8 222,060 + Dsui_0224 0.43 +0.1 222,067 - Dsui_0224 0.44 +0.8 222,182 + Dsui_0224 0.57 -2.0 222,190 - Dsui_0224 0.57 -1.2 222,221 - Dsui_0224 0.61 -0.8 222,256 + Dsui_0224 0.65 -0.8 222,301 - +0.8 222,411 + Dsui_0224 0.82 -1.5 222,426 - Dsui_0224 0.83 +1.8 222,437 + Dsui_0224 0.85 -0.8 222,504 + -0.2 222,570 + -0.8 222,626 - -0.3 222,626 - +0.2 222,720 + -0.2 222,726 + -0.8 222,728 - -1.8 222,772 - -2.2 222,778 + +0.8 222,778 + -0.2 222,786 - -0.2 222,793 + -0.2 222,929 + Dsui_0225 0.51 -0.2 222,932 + Dsui_0225 0.53 -0.8 222,948 - Dsui_0225 0.64 -0.2 222,954 + Dsui_0225 0.68 -2.3 222,954 + Dsui_0225 0.68 -2.3 222,954 + Dsui_0225 0.68 -1.2 222,962 - Dsui_0225 0.74 -0.2 222,962 - Dsui_0225 0.74 +0.8 222,996 - +0.8 223,006 - +0.8 223,019 - +0.8 223,068 + -0.8
Or see this region's nucleotide sequence