Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0210 and Dsui_0211 are separated by 9 nucleotides Dsui_0211 and Dsui_0212 are separated by 57 nucleotides Dsui_0212 and Dsui_0213 overlap by 8 nucleotides Dsui_0213 and Dsui_0214 overlap by 14 nucleotides Dsui_0214 and Dsui_0215 are separated by 2 nucleotides Dsui_0215 and Dsui_0216 overlap by 4 nucleotides Dsui_0216 and Dsui_0217 overlap by 4 nucleotides Dsui_0217 and Dsui_0218 overlap by 62 nucleotides
Dsui_0210: Dsui_0210 - hypothetical protein, at 211,630 to 213,639
_0210
Dsui_0211: Dsui_0211 - hypothetical protein, at 213,649 to 213,831
_0211
Dsui_0212: Dsui_0212 - hypothetical protein, at 213,889 to 214,266
_0212
Dsui_0213: Dsui_0213 - hypothetical protein, at 214,259 to 214,603
_0213
Dsui_0214: Dsui_0214 - TIGR02594 family protein, at 214,590 to 215,081
_0214
Dsui_0215: Dsui_0215 - hypothetical protein, at 215,084 to 215,500
_0215
Dsui_0216: Dsui_0216 - hypothetical protein, at 215,497 to 215,766
_0216
Dsui_0217: Dsui_0217 - hypothetical protein, at 215,763 to 215,936
_0217
Dsui_0218: Dsui_0218 - Integrase, at 215,875 to 217,176
_0218
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.671 kb on + strand, within Dsui_0211 at 213.679 kb on - strand at 213.843 kb on - strand at 213.952 kb on - strand at 213.952 kb on - strand, within Dsui_0212 at 214.242 kb on + strand at 214.242 kb on + strand at 214.284 kb on + strand at 214.301 kb on + strand, within Dsui_0213 at 214.312 kb on - strand at 214.316 kb on + strand, within Dsui_0213 at 214.324 kb on - strand, within Dsui_0213 at 214.324 kb on - strand, within Dsui_0213 at 214.324 kb on - strand at 214.349 kb on - strand at 214.429 kb on - strand at 214.621 kb on + strand at 214.627 kb on + strand at 214.671 kb on + strand at 214.675 kb on + strand, within Dsui_0214 at 214.691 kb on + strand, within Dsui_0214 at 214.816 kb on + strand, within Dsui_0214 at 214.830 kb on + strand, within Dsui_0214 at 214.981 kb on - strand, within Dsui_0214 at 215.216 kb on - strand, within Dsui_0215 at 215.226 kb on - strand, within Dsui_0215 at 215.365 kb on - strand at 215.450 kb on + strand, within Dsui_0215 at 215.482 kb on + strand at 215.494 kb on + strand at 215.495 kb on - strand at 215.626 kb on + strand, within Dsui_0216 at 215.685 kb on + strand at 215.729 kb on + strand, within Dsui_0216 at 215.757 kb on - strand at 215.760 kb on + strand at 215.856 kb on + strand, within Dsui_0217 at 215.886 kb on + strand at 215.894 kb on - strand at 215.965 kb on - strand at 215.988 kb on + strand at 216.049 kb on + strand, within Dsui_0218 at 216.057 kb on - strand, within Dsui_0218 at 216.057 kb on - strand, within Dsui_0218
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 213,671 + Dsui_0211 0.12 +0.9 213,679 - +0.9 213,843 - +0.9 213,952 - -0.1 213,952 - Dsui_0212 0.17 -1.1 214,242 + +0.9 214,242 + -0.7 214,284 + +0.9 214,301 + Dsui_0213 0.12 +0.9 214,312 - +0.9 214,316 + Dsui_0213 0.17 +0.9 214,324 - Dsui_0213 0.19 +2.5 214,324 - Dsui_0213 0.19 +0.9 214,324 - -0.1 214,349 - +0.9 214,429 - +0.9 214,621 + -1.7 214,627 + +0.9 214,671 + -0.1 214,675 + Dsui_0214 0.17 +0.9 214,691 + Dsui_0214 0.21 -0.1 214,816 + Dsui_0214 0.46 -0.1 214,830 + Dsui_0214 0.49 -1.1 214,981 - Dsui_0214 0.79 -1.1 215,216 - Dsui_0215 0.32 +0.9 215,226 - Dsui_0215 0.34 +0.9 215,365 - +0.9 215,450 + Dsui_0215 0.88 -0.1 215,482 + +0.2 215,494 + +0.9 215,495 - -0.1 215,626 + Dsui_0216 0.48 +0.9 215,685 + +0.9 215,729 + Dsui_0216 0.86 -0.1 215,757 - -0.1 215,760 + -1.7 215,856 + Dsui_0217 0.53 -0.7 215,886 + -0.7 215,894 - +0.4 215,965 - +0.2 215,988 + -0.1 216,049 + Dsui_0218 0.13 -1.9 216,057 - Dsui_0218 0.14 -0.1 216,057 - Dsui_0218 0.14 -0.1
Or see this region's nucleotide sequence