Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0209 and Dsui_0210 overlap by 1 nucleotides Dsui_0210 and Dsui_0211 are separated by 9 nucleotides Dsui_0211 and Dsui_0212 are separated by 57 nucleotides Dsui_0212 and Dsui_0213 overlap by 8 nucleotides Dsui_0213 and Dsui_0214 overlap by 14 nucleotides
Dsui_0209: Dsui_0209 - hypothetical protein, at 210,539 to 211,630
_0209
Dsui_0210: Dsui_0210 - hypothetical protein, at 211,630 to 213,639
_0210
Dsui_0211: Dsui_0211 - hypothetical protein, at 213,649 to 213,831
_0211
Dsui_0212: Dsui_0212 - hypothetical protein, at 213,889 to 214,266
_0212
Dsui_0213: Dsui_0213 - hypothetical protein, at 214,259 to 214,603
_0213
Dsui_0214: Dsui_0214 - TIGR02594 family protein, at 214,590 to 215,081
_0214
Position (kb) 211
212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 210.704 kb on + strand, within Dsui_0209 at 210.832 kb on + strand, within Dsui_0209 at 210.971 kb on + strand at 211.087 kb on + strand, within Dsui_0209 at 211.258 kb on - strand, within Dsui_0209 at 211.304 kb on + strand, within Dsui_0209 at 211.462 kb on - strand, within Dsui_0209 at 211.671 kb on - strand at 211.700 kb on - strand at 211.899 kb on + strand, within Dsui_0210 at 211.907 kb on - strand, within Dsui_0210 at 211.965 kb on + strand at 211.965 kb on + strand at 211.965 kb on + strand at 211.973 kb on - strand, within Dsui_0210 at 211.973 kb on - strand, within Dsui_0210 at 211.973 kb on - strand at 211.973 kb on - strand, within Dsui_0210 at 211.988 kb on - strand at 212.154 kb on - strand at 212.205 kb on + strand, within Dsui_0210 at 212.223 kb on - strand at 212.223 kb on - strand at 212.223 kb on - strand, within Dsui_0210 at 212.328 kb on + strand, within Dsui_0210 at 212.349 kb on + strand, within Dsui_0210 at 212.398 kb on - strand at 212.509 kb on - strand, within Dsui_0210 at 212.621 kb on + strand, within Dsui_0210 at 212.656 kb on - strand, within Dsui_0210 at 212.921 kb on + strand, within Dsui_0210 at 212.921 kb on + strand at 212.929 kb on - strand, within Dsui_0210 at 212.929 kb on - strand, within Dsui_0210 at 212.963 kb on + strand at 212.971 kb on - strand at 212.988 kb on + strand, within Dsui_0210 at 213.197 kb on + strand, within Dsui_0210 at 213.256 kb on - strand, within Dsui_0210 at 213.326 kb on + strand, within Dsui_0210 at 213.350 kb on - strand, within Dsui_0210 at 213.562 kb on + strand at 213.671 kb on + strand, within Dsui_0211 at 213.679 kb on - strand at 213.843 kb on - strand at 213.952 kb on - strand at 213.952 kb on - strand, within Dsui_0212 at 214.242 kb on + strand at 214.242 kb on + strand at 214.284 kb on + strand at 214.301 kb on + strand, within Dsui_0213 at 214.312 kb on - strand at 214.316 kb on + strand, within Dsui_0213 at 214.324 kb on - strand, within Dsui_0213 at 214.324 kb on - strand, within Dsui_0213 at 214.324 kb on - strand at 214.349 kb on - strand at 214.429 kb on - strand at 214.621 kb on + strand at 214.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 210,704 + Dsui_0209 0.15 +0.9 210,832 + Dsui_0209 0.27 +0.9 210,971 + +0.9 211,087 + Dsui_0209 0.50 -1.1 211,258 - Dsui_0209 0.66 -1.7 211,304 + Dsui_0209 0.70 -1.1 211,462 - Dsui_0209 0.85 -1.7 211,671 - -0.7 211,700 - -0.1 211,899 + Dsui_0210 0.13 -0.7 211,907 - Dsui_0210 0.14 +0.9 211,965 + +0.9 211,965 + +0.9 211,965 + +0.9 211,973 - Dsui_0210 0.17 -0.7 211,973 - Dsui_0210 0.17 -1.1 211,973 - +0.9 211,973 - Dsui_0210 0.17 -0.1 211,988 - +0.9 212,154 - -0.1 212,205 + Dsui_0210 0.29 +0.9 212,223 - +0.9 212,223 - +0.9 212,223 - Dsui_0210 0.30 -0.1 212,328 + Dsui_0210 0.35 -0.7 212,349 + Dsui_0210 0.36 -2.8 212,398 - +0.9 212,509 - Dsui_0210 0.44 +0.9 212,621 + Dsui_0210 0.49 -0.5 212,656 - Dsui_0210 0.51 -1.1 212,921 + Dsui_0210 0.64 +0.9 212,921 + +0.9 212,929 - Dsui_0210 0.65 -0.1 212,929 - Dsui_0210 0.65 -1.7 212,963 + -0.7 212,971 - +0.9 212,988 + Dsui_0210 0.68 -0.7 213,197 + Dsui_0210 0.78 +0.9 213,256 - Dsui_0210 0.81 -0.1 213,326 + Dsui_0210 0.84 +0.9 213,350 - Dsui_0210 0.86 -0.7 213,562 + -1.4 213,671 + Dsui_0211 0.12 +0.9 213,679 - +0.9 213,843 - +0.9 213,952 - -0.1 213,952 - Dsui_0212 0.17 -1.1 214,242 + +0.9 214,242 + -0.7 214,284 + +0.9 214,301 + Dsui_0213 0.12 +0.9 214,312 - +0.9 214,316 + Dsui_0213 0.17 +0.9 214,324 - Dsui_0213 0.19 +2.5 214,324 - Dsui_0213 0.19 +0.9 214,324 - -0.1 214,349 - +0.9 214,429 - +0.9 214,621 + -1.7 214,627 + +0.9
Or see this region's nucleotide sequence