Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0196 and Dsui_0197 are separated by 69 nucleotides Dsui_0197 and Dsui_0198 are separated by 6 nucleotides Dsui_0198 and Dsui_0199 overlap by 4 nucleotides
Dsui_0196: Dsui_0196 - hypothetical protein, at 197,537 to 199,060
_0196
Dsui_0197: Dsui_0197 - hypothetical protein, at 199,130 to 199,480
_0197
Dsui_0198: Dsui_0198 - phage conserved hypothetical protein, phiE125 gp8 family, at 199,487 to 200,035
_0198
Dsui_0199: Dsui_0199 - Bacteriophage protein of unknown function (DUF646), at 200,032 to 200,517
_0199
Position (kb)
199
200 Strain fitness (log2 ratio)
-2
-1
0
1 at 198.160 kb on - strand, within Dsui_0196 at 198.245 kb on + strand, within Dsui_0196 at 198.273 kb on - strand, within Dsui_0196 at 198.293 kb on - strand, within Dsui_0196 at 198.333 kb on + strand, within Dsui_0196 at 198.423 kb on - strand, within Dsui_0196 at 198.680 kb on - strand, within Dsui_0196 at 198.891 kb on - strand, within Dsui_0196 at 198.891 kb on - strand, within Dsui_0196 at 199.089 kb on + strand at 199.089 kb on + strand at 199.153 kb on - strand at 199.265 kb on - strand, within Dsui_0197 at 199.274 kb on - strand, within Dsui_0197 at 199.537 kb on - strand at 199.556 kb on + strand, within Dsui_0198 at 199.645 kb on + strand, within Dsui_0198 at 199.691 kb on - strand, within Dsui_0198 at 199.884 kb on - strand, within Dsui_0198 at 199.884 kb on - strand, within Dsui_0198 at 199.933 kb on - strand, within Dsui_0198 at 200.070 kb on - strand at 200.121 kb on - strand, within Dsui_0199 at 200.343 kb on + strand, within Dsui_0199 at 200.454 kb on - strand, within Dsui_0199 at 200.454 kb on - strand, within Dsui_0199
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 198,160 - Dsui_0196 0.41 -0.2 198,245 + Dsui_0196 0.46 -1.5 198,273 - Dsui_0196 0.48 +0.8 198,293 - Dsui_0196 0.50 -1.8 198,333 + Dsui_0196 0.52 -1.5 198,423 - Dsui_0196 0.58 +0.8 198,680 - Dsui_0196 0.75 +0.8 198,891 - Dsui_0196 0.89 +0.8 198,891 - Dsui_0196 0.89 -1.8 199,089 + +0.8 199,089 + -0.8 199,153 - -0.8 199,265 - Dsui_0197 0.38 +0.8 199,274 - Dsui_0197 0.41 -1.2 199,537 - +0.8 199,556 + Dsui_0198 0.13 +0.8 199,645 + Dsui_0198 0.29 +0.8 199,691 - Dsui_0198 0.37 -0.2 199,884 - Dsui_0198 0.72 +0.8 199,884 - Dsui_0198 0.72 -0.5 199,933 - Dsui_0198 0.81 -0.2 200,070 - +0.8 200,121 - Dsui_0199 0.18 -0.2 200,343 + Dsui_0199 0.64 +0.8 200,454 - Dsui_0199 0.87 -1.2 200,454 - Dsui_0199 0.87 +0.8
Or see this region's nucleotide sequence