Strain Fitness in Dechlorosoma suillum PS around Dsui_0194

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0193 and Dsui_0194 overlap by 29 nucleotidesDsui_0194 and Dsui_0195 are separated by 102 nucleotides Dsui_0193: Dsui_0193 - putative phage protein, putative large terminase, at 191,850 to 193,328 _0193 Dsui_0194: Dsui_0194 - phage putative head morphogenesis protein, SPP1 gp7 family, at 193,300 to 196,020 _0194 Dsui_0195: Dsui_0195 - Caudovirus prohead protease, at 196,123 to 197,463 _0195 Position (kb) 193 194 195 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1at 192.374 kb on + strand, within Dsui_0193at 192.543 kb on + strand, within Dsui_0193at 192.611 kb on + strand, within Dsui_0193at 192.611 kb on + strand, within Dsui_0193at 192.626 kb on + strand, within Dsui_0193at 192.812 kb on + strand, within Dsui_0193at 192.834 kb on - strand, within Dsui_0193at 192.837 kb on + strand, within Dsui_0193at 192.953 kb on + strand, within Dsui_0193at 193.032 kb on - strand, within Dsui_0193at 193.036 kb on + strand, within Dsui_0193at 193.071 kb on + strand, within Dsui_0193at 193.123 kb on - strand, within Dsui_0193at 193.225 kb on - strandat 193.397 kb on - strandat 193.707 kb on + strand, within Dsui_0194at 193.707 kb on + strand, within Dsui_0194at 193.726 kb on + strandat 193.734 kb on - strand, within Dsui_0194at 193.856 kb on + strand, within Dsui_0194at 193.927 kb on - strand, within Dsui_0194at 193.974 kb on - strand, within Dsui_0194at 194.118 kb on + strand, within Dsui_0194at 194.138 kb on + strand, within Dsui_0194at 194.138 kb on - strand, within Dsui_0194at 194.146 kb on - strand, within Dsui_0194at 194.169 kb on - strand, within Dsui_0194at 194.235 kb on - strand, within Dsui_0194at 194.377 kb on - strand, within Dsui_0194at 194.456 kb on + strand, within Dsui_0194at 194.456 kb on + strandat 194.493 kb on - strand, within Dsui_0194at 194.753 kb on - strand, within Dsui_0194at 195.036 kb on - strand, within Dsui_0194at 195.036 kb on - strand, within Dsui_0194at 195.204 kb on + strand, within Dsui_0194at 195.231 kb on - strand, within Dsui_0194at 195.263 kb on - strand, within Dsui_0194at 195.278 kb on + strand, within Dsui_0194at 195.337 kb on - strand, within Dsui_0194at 195.630 kb on + strand, within Dsui_0194at 195.630 kb on + strandat 195.638 kb on - strand, within Dsui_0194at 195.727 kb on + strand, within Dsui_0194at 195.838 kb on + strandat 195.857 kb on - strandat 196.075 kb on + strandat 196.163 kb on - strandat 196.184 kb on + strandat 196.192 kb on + strandat 196.205 kb on - strandat 196.208 kb on + strandat 196.470 kb on + strand, within Dsui_0195at 196.698 kb on - strand, within Dsui_0195at 196.712 kb on - strand, within Dsui_0195at 196.757 kb on + strand, within Dsui_0195at 196.775 kb on - strand, within Dsui_0195at 196.933 kb on - strand, within Dsui_0195

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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192,374 + Dsui_0193 0.35 -0.8
192,543 + Dsui_0193 0.47 +0.8
192,611 + Dsui_0193 0.51 +0.8
192,611 + Dsui_0193 0.51 +0.8
192,626 + Dsui_0193 0.52 +0.8
192,812 + Dsui_0193 0.65 -0.2
192,834 - Dsui_0193 0.67 +0.8
192,837 + Dsui_0193 0.67 -0.2
192,953 + Dsui_0193 0.75 +0.8
193,032 - Dsui_0193 0.80 -0.2
193,036 + Dsui_0193 0.80 -0.2
193,071 + Dsui_0193 0.83 -1.2
193,123 - Dsui_0193 0.86 -1.8
193,225 - +0.8
193,397 - -1.2
193,707 + Dsui_0194 0.15 -0.5
193,707 + Dsui_0194 0.15 +0.0
193,726 + +0.8
193,734 - Dsui_0194 0.16 -0.8
193,856 + Dsui_0194 0.20 -2.8
193,927 - Dsui_0194 0.23 -0.2
193,974 - Dsui_0194 0.25 -0.8
194,118 + Dsui_0194 0.30 -0.2
194,138 + Dsui_0194 0.31 +0.8
194,138 - Dsui_0194 0.31 -0.8
194,146 - Dsui_0194 0.31 -0.8
194,169 - Dsui_0194 0.32 -1.2
194,235 - Dsui_0194 0.34 -0.2
194,377 - Dsui_0194 0.40 +0.8
194,456 + Dsui_0194 0.42 -1.2
194,456 + +0.8
194,493 - Dsui_0194 0.44 +0.8
194,753 - Dsui_0194 0.53 +0.8
195,036 - Dsui_0194 0.64 +0.8
195,036 - Dsui_0194 0.64 -0.8
195,204 + Dsui_0194 0.70 -1.2
195,231 - Dsui_0194 0.71 -0.8
195,263 - Dsui_0194 0.72 +0.8
195,278 + Dsui_0194 0.73 +0.8
195,337 - Dsui_0194 0.75 -2.0
195,630 + Dsui_0194 0.86 -0.2
195,630 + +0.8
195,638 - Dsui_0194 0.86 +0.8
195,727 + Dsui_0194 0.89 +0.8
195,838 + -0.2
195,857 - -1.8
196,075 + +0.8
196,163 - +0.8
196,184 + +0.8
196,192 + -0.3
196,205 - -1.2
196,208 + +0.8
196,470 + Dsui_0195 0.26 -2.0
196,698 - Dsui_0195 0.43 -2.2
196,712 - Dsui_0195 0.44 +0.8
196,757 + Dsui_0195 0.47 -1.8
196,775 - Dsui_0195 0.49 +0.8
196,933 - Dsui_0195 0.60 -0.2

Or see this region's nucleotide sequence