Strain Fitness in Dechlorosoma suillum PS around Dsui_0109

Experiment: ALP with Dimethyl Sulfoxide 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0107 and Dsui_0108 are separated by 296 nucleotidesDsui_0108 and Dsui_0109 are separated by 135 nucleotidesDsui_0109 and Dsui_0110 overlap by 4 nucleotides Dsui_0107: Dsui_0107 - PDZ domain-containing protein, at 105,640 to 106,716 _0107 Dsui_0108: Dsui_0108 - hypothetical protein, at 107,013 to 107,132 _0108 Dsui_0109: Dsui_0109 - response regulator of the LytR/AlgR family, at 107,268 to 108,053 _0109 Dsui_0110: Dsui_0110 - Histidine kinase, at 108,050 to 109,006 _0110 Position (kb) 107 108 109Strain fitness (log2 ratio) -3 -2 -1 0 1at 106.274 kb on + strandat 106.294 kb on - strandat 106.294 kb on - strand, within Dsui_0107at 106.327 kb on - strandat 106.332 kb on - strandat 106.351 kb on + strandat 106.352 kb on + strand, within Dsui_0107at 106.354 kb on + strand, within Dsui_0107at 106.357 kb on - strand, within Dsui_0107at 106.357 kb on - strandat 106.397 kb on + strand, within Dsui_0107at 106.397 kb on + strand, within Dsui_0107at 106.397 kb on + strandat 106.405 kb on - strand, within Dsui_0107at 106.405 kb on - strand, within Dsui_0107at 106.410 kb on - strand, within Dsui_0107at 106.452 kb on - strandat 106.492 kb on + strand, within Dsui_0107at 106.500 kb on - strand, within Dsui_0107at 106.502 kb on + strand, within Dsui_0107at 106.502 kb on + strand, within Dsui_0107at 106.536 kb on + strandat 106.544 kb on - strand, within Dsui_0107at 106.570 kb on - strand, within Dsui_0107at 106.572 kb on + strandat 106.653 kb on + strandat 106.655 kb on - strandat 106.660 kb on - strandat 106.735 kb on - strandat 106.758 kb on + strandat 106.758 kb on - strandat 106.786 kb on - strandat 106.787 kb on + strandat 106.795 kb on - strandat 106.795 kb on - strandat 106.814 kb on - strandat 106.833 kb on + strandat 106.868 kb on - strandat 106.868 kb on - strandat 106.890 kb on - strandat 106.912 kb on + strandat 106.915 kb on - strandat 106.923 kb on + strandat 106.925 kb on - strandat 106.962 kb on + strandat 106.962 kb on + strandat 106.965 kb on - strandat 106.970 kb on - strandat 106.974 kb on + strandat 106.974 kb on + strandat 107.012 kb on - strandat 107.068 kb on - strandat 107.096 kb on + strand, within Dsui_0108at 107.146 kb on + strandat 107.146 kb on + strandat 107.154 kb on - strandat 107.154 kb on - strandat 107.159 kb on + strandat 107.177 kb on + strandat 107.177 kb on + strandat 107.194 kb on - strandat 107.256 kb on + strandat 107.264 kb on - strandat 107.332 kb on + strandat 107.332 kb on + strandat 107.340 kb on - strandat 107.340 kb on - strandat 107.342 kb on + strandat 107.395 kb on - strand, within Dsui_0109at 107.433 kb on - strand, within Dsui_0109at 107.472 kb on + strand, within Dsui_0109at 107.504 kb on + strandat 107.581 kb on - strandat 107.648 kb on - strand, within Dsui_0109at 107.648 kb on - strand, within Dsui_0109at 107.658 kb on + strand, within Dsui_0109at 107.700 kb on - strand, within Dsui_0109at 107.703 kb on + strand, within Dsui_0109at 107.724 kb on - strand, within Dsui_0109at 107.759 kb on - strand, within Dsui_0109at 107.831 kb on + strandat 107.862 kb on + strand, within Dsui_0109at 107.985 kb on - strandat 107.985 kb on - strandat 108.040 kb on - strandat 108.065 kb on + strandat 108.068 kb on - strandat 108.078 kb on - strandat 108.165 kb on - strand, within Dsui_0110at 108.172 kb on + strandat 108.202 kb on + strandat 108.235 kb on + strandat 108.385 kb on - strand, within Dsui_0110at 108.387 kb on + strandat 108.387 kb on + strandat 108.445 kb on - strand, within Dsui_0110at 108.461 kb on + strand, within Dsui_0110at 108.480 kb on + strand, within Dsui_0110at 108.488 kb on - strand, within Dsui_0110at 108.488 kb on - strandat 108.515 kb on + strand, within Dsui_0110at 108.518 kb on - strandat 108.575 kb on - strand, within Dsui_0110at 108.586 kb on - strand, within Dsui_0110at 108.658 kb on - strand, within Dsui_0110at 108.672 kb on - strand, within Dsui_0110at 108.726 kb on + strand, within Dsui_0110at 108.783 kb on + strand, within Dsui_0110at 108.787 kb on + strandat 108.848 kb on + strand, within Dsui_0110at 108.894 kb on - strand, within Dsui_0110at 108.953 kb on + strandat 109.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol%
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106,274 + -0.1
106,294 - -1.1
106,294 - Dsui_0107 0.61 -0.1
106,327 - +0.9
106,332 - +0.9
106,351 + +0.9
106,352 + Dsui_0107 0.66 -0.1
106,354 + Dsui_0107 0.66 -1.7
106,357 - Dsui_0107 0.67 -0.5
106,357 - +0.9
106,397 + Dsui_0107 0.70 +0.9
106,397 + Dsui_0107 0.70 -2.9
106,397 + -0.1
106,405 - Dsui_0107 0.71 -1.5
106,405 - Dsui_0107 0.71 -0.7
106,410 - Dsui_0107 0.71 -0.1
106,452 - +0.9
106,492 + Dsui_0107 0.79 -1.1
106,500 - Dsui_0107 0.80 -0.7
106,502 + Dsui_0107 0.80 +0.9
106,502 + Dsui_0107 0.80 +0.9
106,536 + +0.9
106,544 - Dsui_0107 0.84 +0.9
106,570 - Dsui_0107 0.86 -0.7
106,572 + +0.9
106,653 + +0.9
106,655 - -2.1
106,660 - -0.1
106,735 - +0.9
106,758 + +0.9
106,758 - -0.1
106,786 - +0.9
106,787 + -1.5
106,795 - -0.7
106,795 - -0.7
106,814 - +0.9
106,833 + -0.1
106,868 - +0.9
106,868 - +0.9
106,890 - +0.9
106,912 + -0.1
106,915 - +0.9
106,923 + +0.9
106,925 - +0.9
106,962 + -1.1
106,962 + +0.9
106,965 - +0.9
106,970 - -0.7
106,974 + +0.9
106,974 + -0.1
107,012 - -0.1
107,068 - +0.9
107,096 + Dsui_0108 0.69 -1.1
107,146 + +0.9
107,146 + -1.5
107,154 - -1.1
107,154 - +0.9
107,159 + -1.5
107,177 + -0.1
107,177 + -0.7
107,194 - -2.1
107,256 + -1.1
107,264 - +0.9
107,332 + -0.1
107,332 + +0.9
107,340 - -0.1
107,340 - +0.9
107,342 + -1.5
107,395 - Dsui_0109 0.16 +0.9
107,433 - Dsui_0109 0.21 -0.1
107,472 + Dsui_0109 0.26 -2.5
107,504 + +0.9
107,581 - -0.7
107,648 - Dsui_0109 0.48 +0.9
107,648 - Dsui_0109 0.48 -0.7
107,658 + Dsui_0109 0.50 -0.7
107,700 - Dsui_0109 0.55 +0.9
107,703 + Dsui_0109 0.55 -1.1
107,724 - Dsui_0109 0.58 +0.9
107,759 - Dsui_0109 0.62 +0.9
107,831 + -0.7
107,862 + Dsui_0109 0.76 -1.1
107,985 - -2.1
107,985 - +0.9
108,040 - +0.9
108,065 + -2.1
108,068 - +0.9
108,078 - -1.7
108,165 - Dsui_0110 0.12 -1.1
108,172 + +0.9
108,202 + -0.1
108,235 + +0.9
108,385 - Dsui_0110 0.35 +0.9
108,387 + +0.9
108,387 + +0.9
108,445 - Dsui_0110 0.41 +0.9
108,461 + Dsui_0110 0.43 -1.1
108,480 + Dsui_0110 0.45 -0.7
108,488 - Dsui_0110 0.46 -1.1
108,488 - +0.9
108,515 + Dsui_0110 0.49 -1.9
108,518 - +0.9
108,575 - Dsui_0110 0.55 -0.7
108,586 - Dsui_0110 0.56 -1.1
108,658 - Dsui_0110 0.64 -0.1
108,672 - Dsui_0110 0.65 +0.9
108,726 + Dsui_0110 0.71 -1.7
108,783 + Dsui_0110 0.77 +0.9
108,787 + +0.9
108,848 + Dsui_0110 0.83 -0.7
108,894 - Dsui_0110 0.88 -0.1
108,953 + -0.7
109,034 + -2.1

Or see this region's nucleotide sequence