Experiment: ALP with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0010 and Dsui_0011 are separated by 417 nucleotides Dsui_0011 and Dsui_0012 are separated by 221 nucleotides
Dsui_0010: Dsui_0010 - RraA family protein, at 8,436 to 8,927
_0010
Dsui_0011: Dsui_0011 - isocitrate lyase, at 9,345 to 10,655
_0011
Dsui_0012: Dsui_0012 - putative permease, DMT superfamily, at 10,877 to 11,764
_0012
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 8.441 kb on - strand at 8.443 kb on + strand at 8.449 kb on + strand at 8.449 kb on + strand at 8.449 kb on + strand at 8.449 kb on + strand at 8.449 kb on + strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.485 kb on + strand at 8.485 kb on + strand at 8.521 kb on - strand, within Dsui_0010 at 8.533 kb on + strand, within Dsui_0010 at 8.562 kb on - strand, within Dsui_0010 at 8.601 kb on - strand, within Dsui_0010 at 8.601 kb on - strand, within Dsui_0010 at 8.606 kb on - strand, within Dsui_0010 at 8.618 kb on + strand, within Dsui_0010 at 8.626 kb on - strand, within Dsui_0010 at 8.626 kb on - strand, within Dsui_0010 at 8.764 kb on + strand, within Dsui_0010 at 8.781 kb on + strand, within Dsui_0010 at 8.894 kb on - strand at 8.991 kb on + strand at 9.010 kb on + strand at 9.070 kb on - strand at 9.089 kb on + strand at 9.103 kb on + strand at 9.279 kb on + strand at 9.279 kb on + strand at 9.281 kb on + strand at 9.287 kb on - strand at 9.291 kb on + strand at 9.291 kb on + strand at 9.352 kb on + strand at 9.360 kb on - strand at 9.383 kb on + strand at 9.457 kb on + strand at 9.478 kb on + strand, within Dsui_0011 at 9.486 kb on - strand, within Dsui_0011 at 9.501 kb on - strand, within Dsui_0011 at 9.587 kb on + strand, within Dsui_0011 at 9.587 kb on + strand, within Dsui_0011 at 9.590 kb on - strand, within Dsui_0011 at 9.629 kb on + strand, within Dsui_0011 at 9.641 kb on + strand, within Dsui_0011 at 9.677 kb on - strand, within Dsui_0011 at 9.763 kb on + strand, within Dsui_0011 at 9.771 kb on - strand, within Dsui_0011 at 9.771 kb on - strand, within Dsui_0011 at 9.850 kb on + strand, within Dsui_0011 at 9.928 kb on + strand, within Dsui_0011 at 9.965 kb on - strand, within Dsui_0011 at 10.018 kb on - strand, within Dsui_0011 at 10.018 kb on - strand, within Dsui_0011 at 10.035 kb on - strand, within Dsui_0011 at 10.040 kb on - strand, within Dsui_0011 at 10.057 kb on + strand, within Dsui_0011 at 10.065 kb on - strand, within Dsui_0011 at 10.150 kb on + strand, within Dsui_0011 at 10.158 kb on - strand, within Dsui_0011 at 10.258 kb on - strand, within Dsui_0011 at 10.258 kb on - strand, within Dsui_0011 at 10.297 kb on - strand, within Dsui_0011 at 10.371 kb on + strand, within Dsui_0011 at 10.432 kb on + strand, within Dsui_0011 at 10.456 kb on - strand, within Dsui_0011 at 10.456 kb on - strand, within Dsui_0011 at 10.467 kb on + strand, within Dsui_0011 at 10.531 kb on - strand at 10.614 kb on - strand at 10.625 kb on - strand at 10.625 kb on - strand at 10.690 kb on - strand at 10.748 kb on - strand at 10.773 kb on + strand at 10.773 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.833 kb on - strand at 10.854 kb on + strand at 10.867 kb on + strand at 10.867 kb on + strand at 10.875 kb on - strand at 11.015 kb on - strand, within Dsui_0012 at 11.021 kb on - strand at 11.045 kb on + strand, within Dsui_0012 at 11.105 kb on - strand, within Dsui_0012 at 11.110 kb on - strand, within Dsui_0012 at 11.163 kb on - strand, within Dsui_0012 at 11.255 kb on - strand, within Dsui_0012 at 11.267 kb on - strand, within Dsui_0012 at 11.274 kb on - strand, within Dsui_0012 at 11.343 kb on + strand, within Dsui_0012 at 11.408 kb on + strand, within Dsui_0012 at 11.428 kb on - strand, within Dsui_0012 at 11.434 kb on + strand, within Dsui_0012 at 11.471 kb on + strand, within Dsui_0012 at 11.524 kb on - strand at 11.536 kb on + strand, within Dsui_0012 at 11.536 kb on + strand, within Dsui_0012 at 11.547 kb on + strand, within Dsui_0012 at 11.550 kb on - strand, within Dsui_0012 at 11.598 kb on + strand, within Dsui_0012 at 11.610 kb on - strand at 11.610 kb on - strand, within Dsui_0012
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Dimethyl Sulfoxide 2 vol% remove 8,441 - -0.7 8,443 + -0.2 8,449 + +0.6 8,449 + +2.1 8,449 + -0.1 8,449 + -0.9 8,449 + +1.9 8,457 - +0.9 8,457 - +0.9 8,457 - +0.9 8,457 - -0.1 8,457 - -0.1 8,457 - -0.7 8,457 - -1.1 8,485 + -0.1 8,485 + +0.9 8,521 - Dsui_0010 0.17 -1.1 8,533 + Dsui_0010 0.20 -0.8 8,562 - Dsui_0010 0.26 -0.1 8,601 - Dsui_0010 0.34 -1.5 8,601 - Dsui_0010 0.34 +0.9 8,606 - Dsui_0010 0.35 -0.1 8,618 + Dsui_0010 0.37 +0.1 8,626 - Dsui_0010 0.39 -0.7 8,626 - Dsui_0010 0.39 +0.9 8,764 + Dsui_0010 0.67 +0.0 8,781 + Dsui_0010 0.70 +0.7 8,894 - +0.9 8,991 + -0.7 9,010 + +0.9 9,070 - +0.9 9,089 + -1.9 9,103 + -1.1 9,279 + +0.9 9,279 + +0.9 9,281 + -3.8 9,287 - -1.5 9,291 + -0.1 9,291 + -2.1 9,352 + +1.9 9,360 - -0.1 9,383 + +1.9 9,457 + +1.6 9,478 + Dsui_0011 0.10 -0.7 9,486 - Dsui_0011 0.11 +0.9 9,501 - Dsui_0011 0.12 -0.1 9,587 + Dsui_0011 0.18 -0.7 9,587 + Dsui_0011 0.18 -1.3 9,590 - Dsui_0011 0.19 +0.9 9,629 + Dsui_0011 0.22 +0.9 9,641 + Dsui_0011 0.23 -2.6 9,677 - Dsui_0011 0.25 -2.8 9,763 + Dsui_0011 0.32 -1.1 9,771 - Dsui_0011 0.32 +0.9 9,771 - Dsui_0011 0.32 -0.7 9,850 + Dsui_0011 0.39 -0.1 9,928 + Dsui_0011 0.44 +0.9 9,965 - Dsui_0011 0.47 -0.1 10,018 - Dsui_0011 0.51 -1.7 10,018 - Dsui_0011 0.51 -0.7 10,035 - Dsui_0011 0.53 +0.9 10,040 - Dsui_0011 0.53 -0.1 10,057 + Dsui_0011 0.54 -1.1 10,065 - Dsui_0011 0.55 -0.7 10,150 + Dsui_0011 0.61 +0.9 10,158 - Dsui_0011 0.62 -1.5 10,258 - Dsui_0011 0.70 -1.1 10,258 - Dsui_0011 0.70 +0.9 10,297 - Dsui_0011 0.73 -0.1 10,371 + Dsui_0011 0.78 -1.1 10,432 + Dsui_0011 0.83 +0.9 10,456 - Dsui_0011 0.85 -1.1 10,456 - Dsui_0011 0.85 -1.7 10,467 + Dsui_0011 0.86 -0.6 10,531 - -0.7 10,614 - -0.1 10,625 - -1.1 10,625 - +0.9 10,690 - +0.9 10,748 - +0.9 10,773 + +0.1 10,773 - +0.9 10,781 - -0.7 10,781 - +0.9 10,781 - +0.9 10,781 - +0.9 10,781 - +0.9 10,781 - +0.9 10,833 - -1.9 10,854 + -0.7 10,867 + +0.7 10,867 + -1.0 10,875 - -0.1 11,015 - Dsui_0012 0.16 -0.1 11,021 - +0.9 11,045 + Dsui_0012 0.19 -0.0 11,105 - Dsui_0012 0.26 -0.7 11,110 - Dsui_0012 0.26 -2.3 11,163 - Dsui_0012 0.32 -2.3 11,255 - Dsui_0012 0.43 -1.1 11,267 - Dsui_0012 0.44 +0.9 11,274 - Dsui_0012 0.45 +0.9 11,343 + Dsui_0012 0.52 +0.1 11,408 + Dsui_0012 0.60 -0.7 11,428 - Dsui_0012 0.62 -1.1 11,434 + Dsui_0012 0.63 -0.1 11,471 + Dsui_0012 0.67 -0.1 11,524 - -0.1 11,536 + Dsui_0012 0.74 +0.9 11,536 + Dsui_0012 0.74 -2.8 11,547 + Dsui_0012 0.75 -0.4 11,550 - Dsui_0012 0.76 -0.1 11,598 + Dsui_0012 0.81 +0.9 11,610 - -0.1 11,610 - Dsui_0012 0.83 +0.9
Or see this region's nucleotide sequence