Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3164

Experiment: 20 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3163 and DvMF_3164 are separated by 239 nucleotidesDvMF_3164 and DvMF_3165 are separated by 272 nucleotidesDvMF_3165 and DvMF_3166 are separated by 10 nucleotides DvMF_3163: DvMF_3163 - signal peptide peptidase SppA, 36K type (RefSeq), at 3,989,316 to 3,990,323 _3163 DvMF_3164: DvMF_3164 - Cobyrinic acid ac-diamide synthase (RefSeq), at 3,990,563 to 3,991,516 _3164 DvMF_3165: DvMF_3165 - hydrogenase accessory protein HypB (RefSeq), at 3,991,789 to 3,992,445 _3165 DvMF_3166: DvMF_3166 - hydrogenase expression/synthesis HypA (RefSeq), at 3,992,456 to 3,992,800 _3166 Position (kb) 3990 3991 3992Strain fitness (log2 ratio) -1 0 1at 3989.745 kb on + strand, within DvMF_3163at 3989.796 kb on - strand, within DvMF_3163at 3989.854 kb on + strand, within DvMF_3163at 3990.185 kb on - strand, within DvMF_3163at 3990.247 kb on + strandat 3990.806 kb on - strand, within DvMF_3164at 3991.426 kb on + strandat 3991.552 kb on - strandat 3991.559 kb on + strandat 3991.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM Lactate (C)
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3,989,745 + DvMF_3163 0.43 +1.0
3,989,796 - DvMF_3163 0.48 +0.7
3,989,854 + DvMF_3163 0.53 +0.2
3,990,185 - DvMF_3163 0.86 +0.3
3,990,247 + +0.9
3,990,806 - DvMF_3164 0.25 +0.9
3,991,426 + +0.7
3,991,552 - -0.6
3,991,559 + +0.7
3,991,782 - +0.8

Or see this region's nucleotide sequence