Experiment: 20 mM Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3029 and DvMF_3030 are separated by 136 nucleotides DvMF_3030 and DvMF_3031 are separated by 480 nucleotides DvMF_3031 and DvMF_3032 are separated by 267 nucleotides
DvMF_3029: DvMF_3029 - ABC transporter related (RefSeq), at 3,822,935 to 3,824,548
_3029
DvMF_3030: DvMF_3030 - regulatory protein, FmdB family (RefSeq), at 3,824,685 to 3,824,996
_3030
DvMF_3031: DvMF_3031 - intracellular protease, PfpI family (RefSeq), at 3,825,477 to 3,826,064
_3031
DvMF_3032: DvMF_3032 - dienelactone hydrolase (RefSeq), at 3,826,332 to 3,827,222
_3032
Position (kb)
3825
3826
3827 Strain fitness (log2 ratio)
-1
0
1
2 at 3825.038 kb on + strand at 3825.038 kb on + strand at 3825.046 kb on - strand at 3825.138 kb on - strand at 3825.268 kb on + strand at 3825.470 kb on - strand at 3825.473 kb on + strand at 3825.632 kb on - strand, within DvMF_3031 at 3825.673 kb on + strand, within DvMF_3031 at 3825.716 kb on + strand, within DvMF_3031 at 3825.761 kb on - strand, within DvMF_3031 at 3825.763 kb on + strand, within DvMF_3031 at 3825.878 kb on + strand, within DvMF_3031 at 3825.886 kb on - strand, within DvMF_3031 at 3826.018 kb on - strand at 3826.059 kb on + strand at 3826.486 kb on - strand, within DvMF_3032 at 3826.696 kb on - strand, within DvMF_3032 at 3826.767 kb on - strand, within DvMF_3032 at 3826.969 kb on + strand, within DvMF_3032 at 3826.969 kb on + strand, within DvMF_3032 at 3826.982 kb on - strand, within DvMF_3032
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM Lactate (C) remove 3,825,038 + +0.8 3,825,038 + -0.1 3,825,046 - +0.3 3,825,138 - -0.1 3,825,268 + +0.8 3,825,470 - +0.5 3,825,473 + +0.3 3,825,632 - DvMF_3031 0.26 +0.2 3,825,673 + DvMF_3031 0.33 +0.3 3,825,716 + DvMF_3031 0.41 +0.9 3,825,761 - DvMF_3031 0.48 +0.2 3,825,763 + DvMF_3031 0.49 +0.4 3,825,878 + DvMF_3031 0.68 +2.0 3,825,886 - DvMF_3031 0.70 +1.0 3,826,018 - +0.5 3,826,059 + +0.6 3,826,486 - DvMF_3032 0.17 +0.3 3,826,696 - DvMF_3032 0.41 +0.5 3,826,767 - DvMF_3032 0.49 +0.4 3,826,969 + DvMF_3032 0.71 -0.2 3,826,969 + DvMF_3032 0.71 +0.8 3,826,982 - DvMF_3032 0.73 -0.1
Or see this region's nucleotide sequence