Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2732

Experiment: 20 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2731 and DvMF_2732 overlap by 4 nucleotidesDvMF_2732 and DvMF_2733 are separated by 18 nucleotides DvMF_2731: DvMF_2731 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,455,132 to 3,458,155 _2731 DvMF_2732: DvMF_2732 - TadE family protein (RefSeq), at 3,458,152 to 3,458,640 _2732 DvMF_2733: DvMF_2733 - von Willebrand factor type A (RefSeq), at 3,458,659 to 3,459,879 _2733 Position (kb) 3458 3459Strain fitness (log2 ratio) -1 0 1at 3457.193 kb on - strand, within DvMF_2731at 3457.265 kb on + strand, within DvMF_2731at 3457.530 kb on - strand, within DvMF_2731at 3457.672 kb on + strand, within DvMF_2731at 3457.795 kb on + strand, within DvMF_2731at 3458.126 kb on + strandat 3458.169 kb on + strandat 3458.382 kb on + strand, within DvMF_2732at 3458.437 kb on + strand, within DvMF_2732at 3458.473 kb on + strand, within DvMF_2732at 3458.570 kb on - strand, within DvMF_2732at 3458.848 kb on - strand, within DvMF_2733at 3458.916 kb on + strand, within DvMF_2733at 3458.960 kb on + strand, within DvMF_2733at 3459.023 kb on + strand, within DvMF_2733at 3459.358 kb on + strand, within DvMF_2733at 3459.554 kb on + strand, within DvMF_2733at 3459.578 kb on + strand, within DvMF_2733at 3459.586 kb on - strand, within DvMF_2733

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM Lactate (C)
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3,457,193 - DvMF_2731 0.68 +0.5
3,457,265 + DvMF_2731 0.71 -0.7
3,457,530 - DvMF_2731 0.79 +0.8
3,457,672 + DvMF_2731 0.84 +0.8
3,457,795 + DvMF_2731 0.88 +0.4
3,458,126 + +0.4
3,458,169 + -0.4
3,458,382 + DvMF_2732 0.47 +1.7
3,458,437 + DvMF_2732 0.58 +0.4
3,458,473 + DvMF_2732 0.66 +0.3
3,458,570 - DvMF_2732 0.85 +0.5
3,458,848 - DvMF_2733 0.15 +1.3
3,458,916 + DvMF_2733 0.21 +0.4
3,458,960 + DvMF_2733 0.25 +0.8
3,459,023 + DvMF_2733 0.30 +0.7
3,459,358 + DvMF_2733 0.57 +0.6
3,459,554 + DvMF_2733 0.73 -0.3
3,459,578 + DvMF_2733 0.75 +1.0
3,459,586 - DvMF_2733 0.76 -0.1

Or see this region's nucleotide sequence