Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2666

Experiment: 20 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2665 and DvMF_2666 are separated by 585 nucleotidesDvMF_2666 and DvMF_2667 are separated by 75 nucleotides DvMF_2665: DvMF_2665 - hypothetical protein (RefSeq), at 3,367,154 to 3,368,788 _2665 DvMF_2666: DvMF_2666 - protein of unknown function UPF0047 (RefSeq), at 3,369,374 to 3,369,790 _2666 DvMF_2667: DvMF_2667 - hypothetical protein (RefSeq), at 3,369,866 to 3,370,837 _2667 Position (kb) 3369 3370Strain fitness (log2 ratio) -1 0 1at 3368.752 kb on + strandat 3369.236 kb on + strandat 3369.244 kb on - strandat 3369.253 kb on - strandat 3369.259 kb on + strandat 3369.493 kb on + strand, within DvMF_2666at 3369.608 kb on + strand, within DvMF_2666at 3369.652 kb on + strand, within DvMF_2666at 3369.652 kb on + strand, within DvMF_2666at 3369.703 kb on + strand, within DvMF_2666at 3369.705 kb on + strand, within DvMF_2666at 3369.892 kb on - strandat 3369.892 kb on - strandat 3370.014 kb on + strand, within DvMF_2667at 3370.022 kb on - strand, within DvMF_2667at 3370.022 kb on - strand, within DvMF_2667at 3370.027 kb on - strand, within DvMF_2667at 3370.246 kb on - strand, within DvMF_2667at 3370.393 kb on + strand, within DvMF_2667at 3370.475 kb on + strand, within DvMF_2667at 3370.544 kb on - strand, within DvMF_2667at 3370.549 kb on - strand, within DvMF_2667

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM Lactate (C)
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3,368,752 + +0.5
3,369,236 + -0.1
3,369,244 - -0.8
3,369,253 - +1.4
3,369,259 + +0.4
3,369,493 + DvMF_2666 0.29 -0.8
3,369,608 + DvMF_2666 0.56 -0.5
3,369,652 + DvMF_2666 0.67 +0.5
3,369,652 + DvMF_2666 0.67 -0.1
3,369,703 + DvMF_2666 0.79 +0.3
3,369,705 + DvMF_2666 0.79 +0.4
3,369,892 - +1.3
3,369,892 - +0.1
3,370,014 + DvMF_2667 0.15 +0.4
3,370,022 - DvMF_2667 0.16 +0.6
3,370,022 - DvMF_2667 0.16 -0.0
3,370,027 - DvMF_2667 0.17 +0.4
3,370,246 - DvMF_2667 0.39 +0.1
3,370,393 + DvMF_2667 0.54 +0.9
3,370,475 + DvMF_2667 0.63 +0.6
3,370,544 - DvMF_2667 0.70 +0.5
3,370,549 - DvMF_2667 0.70 +0.7

Or see this region's nucleotide sequence