Experiment: 20 mM Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2256 and DvMF_2257 are separated by 325 nucleotides DvMF_2257 and DvMF_2258 are separated by 205 nucleotides DvMF_2258 and DvMF_2259 are separated by 137 nucleotides
DvMF_2256: DvMF_2256 - transcriptional regulator, MucR family (RefSeq), at 2,835,164 to 2,835,556
_2256
DvMF_2257: DvMF_2257 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,835,882 to 2,837,693
_2257
DvMF_2258: DvMF_2258 - hypothetical protein (RefSeq), at 2,837,899 to 2,838,387
_2258
DvMF_2259: DvMF_2259 - ABC transporter related (RefSeq), at 2,838,525 to 2,839,349
_2259
Position (kb)
2835
2836
2837
2838 Strain fitness (log2 ratio)
-1
0
1 at 2835.181 kb on + strand at 2835.269 kb on - strand, within DvMF_2256 at 2835.484 kb on - strand, within DvMF_2256 at 2835.577 kb on - strand at 2836.118 kb on + strand, within DvMF_2257 at 2836.198 kb on + strand, within DvMF_2257 at 2836.231 kb on + strand, within DvMF_2257 at 2836.547 kb on - strand, within DvMF_2257 at 2836.552 kb on - strand, within DvMF_2257 at 2836.626 kb on + strand, within DvMF_2257 at 2836.897 kb on - strand, within DvMF_2257 at 2836.999 kb on - strand, within DvMF_2257 at 2837.442 kb on + strand, within DvMF_2257 at 2837.492 kb on + strand, within DvMF_2257 at 2837.639 kb on + strand at 2837.647 kb on - strand at 2837.952 kb on + strand, within DvMF_2258 at 2838.549 kb on - strand at 2838.666 kb on - strand, within DvMF_2259
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM Lactate (C) remove 2,835,181 + +1.2 2,835,269 - DvMF_2256 0.27 +0.2 2,835,484 - DvMF_2256 0.81 -1.3 2,835,577 - -0.9 2,836,118 + DvMF_2257 0.13 +0.4 2,836,198 + DvMF_2257 0.17 +0.2 2,836,231 + DvMF_2257 0.19 +0.0 2,836,547 - DvMF_2257 0.37 -0.0 2,836,552 - DvMF_2257 0.37 -0.3 2,836,626 + DvMF_2257 0.41 -0.1 2,836,897 - DvMF_2257 0.56 +0.2 2,836,999 - DvMF_2257 0.62 -1.3 2,837,442 + DvMF_2257 0.86 +0.3 2,837,492 + DvMF_2257 0.89 +0.9 2,837,639 + +0.3 2,837,647 - -0.3 2,837,952 + DvMF_2258 0.11 +1.2 2,838,549 - +0.4 2,838,666 - DvMF_2259 0.17 +0.9
Or see this region's nucleotide sequence