Experiment: 20 mM Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1755 and DvMF_1756 are separated by 165 nucleotides DvMF_1756 and DvMF_1757 are separated by 252 nucleotides DvMF_1757 and DvMF_1758 are separated by 288 nucleotides
DvMF_1755: DvMF_1755 - phosphoesterase RecJ domain protein (RefSeq), at 2,143,703 to 2,144,965
_1755
DvMF_1756: DvMF_1756 - hypothetical protein (RefSeq), at 2,145,131 to 2,145,946
_1756
DvMF_1757: DvMF_1757 - hypothetical protein (RefSeq), at 2,146,199 to 2,146,348
_1757
DvMF_1758: DvMF_1758 - UvrD/REP helicase (RefSeq), at 2,146,637 to 2,150,371
_1758
Position (kb)
2145
2146 Strain fitness (log2 ratio)
-2
-1
0
1 at 2145.136 kb on - strand at 2145.237 kb on + strand, within DvMF_1756 at 2145.391 kb on - strand, within DvMF_1756 at 2145.457 kb on - strand, within DvMF_1756 at 2145.607 kb on - strand, within DvMF_1756 at 2145.607 kb on - strand, within DvMF_1756 at 2145.822 kb on - strand, within DvMF_1756 at 2145.822 kb on - strand, within DvMF_1756 at 2145.897 kb on + strand at 2145.950 kb on - strand at 2146.134 kb on - strand at 2146.155 kb on - strand at 2146.190 kb on - strand at 2146.425 kb on - strand at 2146.541 kb on + strand at 2146.560 kb on - strand at 2146.609 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM Lactate (C) remove 2,145,136 - +1.0 2,145,237 + DvMF_1756 0.13 -1.0 2,145,391 - DvMF_1756 0.32 -1.8 2,145,457 - DvMF_1756 0.40 -0.9 2,145,607 - DvMF_1756 0.58 -1.5 2,145,607 - DvMF_1756 0.58 -1.4 2,145,822 - DvMF_1756 0.85 -1.9 2,145,822 - DvMF_1756 0.85 +0.3 2,145,897 + +0.7 2,145,950 - +0.3 2,146,134 - +0.6 2,146,155 - -0.3 2,146,190 - +0.4 2,146,425 - +0.9 2,146,541 + +0.6 2,146,560 - +0.5 2,146,609 + +0.5
Or see this region's nucleotide sequence