Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1756

Experiment: 20 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1755 and DvMF_1756 are separated by 165 nucleotidesDvMF_1756 and DvMF_1757 are separated by 252 nucleotidesDvMF_1757 and DvMF_1758 are separated by 288 nucleotides DvMF_1755: DvMF_1755 - phosphoesterase RecJ domain protein (RefSeq), at 2,143,703 to 2,144,965 _1755 DvMF_1756: DvMF_1756 - hypothetical protein (RefSeq), at 2,145,131 to 2,145,946 _1756 DvMF_1757: DvMF_1757 - hypothetical protein (RefSeq), at 2,146,199 to 2,146,348 _1757 DvMF_1758: DvMF_1758 - UvrD/REP helicase (RefSeq), at 2,146,637 to 2,150,371 _1758 Position (kb) 2145 2146Strain fitness (log2 ratio) -2 -1 0 1at 2145.136 kb on - strandat 2145.237 kb on + strand, within DvMF_1756at 2145.391 kb on - strand, within DvMF_1756at 2145.457 kb on - strand, within DvMF_1756at 2145.607 kb on - strand, within DvMF_1756at 2145.607 kb on - strand, within DvMF_1756at 2145.822 kb on - strand, within DvMF_1756at 2145.822 kb on - strand, within DvMF_1756at 2145.897 kb on + strandat 2145.950 kb on - strandat 2146.134 kb on - strandat 2146.155 kb on - strandat 2146.190 kb on - strandat 2146.425 kb on - strandat 2146.541 kb on + strandat 2146.560 kb on - strandat 2146.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM Lactate (C)
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2,145,136 - +1.0
2,145,237 + DvMF_1756 0.13 -1.0
2,145,391 - DvMF_1756 0.32 -1.8
2,145,457 - DvMF_1756 0.40 -0.9
2,145,607 - DvMF_1756 0.58 -1.5
2,145,607 - DvMF_1756 0.58 -1.4
2,145,822 - DvMF_1756 0.85 -1.9
2,145,822 - DvMF_1756 0.85 +0.3
2,145,897 + +0.7
2,145,950 - +0.3
2,146,134 - +0.6
2,146,155 - -0.3
2,146,190 - +0.4
2,146,425 - +0.9
2,146,541 + +0.6
2,146,560 - +0.5
2,146,609 + +0.5

Or see this region's nucleotide sequence