Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0870

Experiment: 20 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0868 and DvMF_0869 are separated by 128 nucleotidesDvMF_0869 and DvMF_0870 are separated by 108 nucleotidesDvMF_0870 and DvMF_0871 are separated by 160 nucleotides DvMF_0868: DvMF_0868 - hypothetical protein (RefSeq), at 1,046,375 to 1,046,848 _0868 DvMF_0869: DvMF_0869 - hypothetical protein (RefSeq), at 1,046,977 to 1,047,213 _0869 DvMF_0870: DvMF_0870 - RNA binding S1 domain protein (RefSeq), at 1,047,322 to 1,049,592 _0870 DvMF_0871: DvMF_0871 - hypothetical protein (RefSeq), at 1,049,753 to 1,052,377 _0871 Position (kb) 1047 1048 1049 1050Strain fitness (log2 ratio) -1 0 1at 1046.791 kb on + strand, within DvMF_0868at 1047.024 kb on - strand, within DvMF_0869at 1047.168 kb on - strand, within DvMF_0869at 1047.216 kb on - strandat 1047.246 kb on - strandat 1047.423 kb on - strandat 1047.679 kb on + strand, within DvMF_0870at 1047.712 kb on + strand, within DvMF_0870at 1047.772 kb on - strand, within DvMF_0870at 1047.777 kb on + strand, within DvMF_0870at 1047.815 kb on + strand, within DvMF_0870at 1047.869 kb on + strand, within DvMF_0870at 1048.120 kb on + strand, within DvMF_0870at 1048.183 kb on - strand, within DvMF_0870at 1048.444 kb on - strand, within DvMF_0870at 1048.512 kb on - strand, within DvMF_0870at 1048.529 kb on + strand, within DvMF_0870at 1048.537 kb on - strand, within DvMF_0870at 1048.839 kb on + strand, within DvMF_0870at 1048.873 kb on + strand, within DvMF_0870at 1048.916 kb on - strand, within DvMF_0870at 1048.968 kb on - strand, within DvMF_0870at 1049.137 kb on - strand, within DvMF_0870at 1049.240 kb on + strand, within DvMF_0870at 1049.240 kb on + strand, within DvMF_0870at 1049.248 kb on - strand, within DvMF_0870at 1049.515 kb on + strandat 1049.829 kb on - strandat 1049.845 kb on + strandat 1049.954 kb on - strandat 1049.954 kb on - strandat 1050.310 kb on - strand, within DvMF_0871

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM Lactate (C)
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1,046,791 + DvMF_0868 0.88 +1.6
1,047,024 - DvMF_0869 0.20 +0.4
1,047,168 - DvMF_0869 0.81 +0.5
1,047,216 - -0.1
1,047,246 - +0.9
1,047,423 - +0.9
1,047,679 + DvMF_0870 0.16 +0.3
1,047,712 + DvMF_0870 0.17 +0.1
1,047,772 - DvMF_0870 0.20 +0.3
1,047,777 + DvMF_0870 0.20 +0.5
1,047,815 + DvMF_0870 0.22 +0.7
1,047,869 + DvMF_0870 0.24 +0.4
1,048,120 + DvMF_0870 0.35 +0.3
1,048,183 - DvMF_0870 0.38 +0.5
1,048,444 - DvMF_0870 0.49 +0.3
1,048,512 - DvMF_0870 0.52 -0.0
1,048,529 + DvMF_0870 0.53 +0.3
1,048,537 - DvMF_0870 0.54 +0.4
1,048,839 + DvMF_0870 0.67 +0.3
1,048,873 + DvMF_0870 0.68 -0.3
1,048,916 - DvMF_0870 0.70 +0.3
1,048,968 - DvMF_0870 0.72 +0.3
1,049,137 - DvMF_0870 0.80 +0.7
1,049,240 + DvMF_0870 0.84 +0.9
1,049,240 + DvMF_0870 0.84 +0.4
1,049,248 - DvMF_0870 0.85 +0.5
1,049,515 + +0.5
1,049,829 - +0.4
1,049,845 + -0.3
1,049,954 - +0.1
1,049,954 - +0.5
1,050,310 - DvMF_0871 0.21 +0.9

Or see this region's nucleotide sequence