Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0613

Experiment: 20 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproA and DvMF_0613 are separated by 155 nucleotidesDvMF_0613 and DvMF_0614 overlap by 10 nucleotides DvMF_0612: proA - gamma-glutamyl phosphate reductase (RefSeq), at 725,285 to 726,595 proA DvMF_0613: DvMF_0613 - nicotinate (nicotinamide) nucleotide adenylyltransferase (RefSeq), at 726,751 to 727,605 _0613 DvMF_0614: DvMF_0614 - Tetratricopeptide domain protein (RefSeq), at 727,596 to 728,411 _0614 Position (kb) 726 727 728Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 725.784 kb on + strand, within proAat 725.857 kb on - strand, within proAat 726.058 kb on - strand, within proAat 726.351 kb on + strand, within proAat 726.359 kb on - strand, within proAat 726.504 kb on + strandat 727.515 kb on - strand, within DvMF_0613at 727.648 kb on - strandat 727.857 kb on - strand, within DvMF_0614at 727.944 kb on + strand, within DvMF_0614at 728.065 kb on + strand, within DvMF_0614at 728.290 kb on - strand, within DvMF_0614

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM Lactate (C)
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725,784 + proA DvMF_0612 0.38 -6.0
725,857 - proA DvMF_0612 0.44 -2.6
726,058 - proA DvMF_0612 0.59 +0.0
726,351 + proA DvMF_0612 0.81 -4.5
726,359 - proA DvMF_0612 0.82 -2.6
726,504 + -3.6
727,515 - DvMF_0613 0.89 -0.5
727,648 - +0.2
727,857 - DvMF_0614 0.32 +0.3
727,944 + DvMF_0614 0.43 +1.6
728,065 + DvMF_0614 0.57 +0.5
728,290 - DvMF_0614 0.85 +0.7

Or see this region's nucleotide sequence