Experiment: 20 mM Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0532 and DvMF_0533 are separated by 72 nucleotides DvMF_0533 and DvMF_0534 are separated by 6 nucleotides DvMF_0534 and DvMF_0535 are separated by 9 nucleotides DvMF_0535 and DvMF_0536 overlap by 8 nucleotides
DvMF_0532: DvMF_0532 - UbiA prenyltransferase (RefSeq), at 628,030 to 629,070
_0532
DvMF_0533: DvMF_0533 - cytochrome c oxidase, subunit II (RefSeq), at 629,143 to 630,360
_0533
DvMF_0534: DvMF_0534 - caa(3)-type oxidase, subunit IV (RefSeq), at 630,367 to 630,657
_0534
DvMF_0535: DvMF_0535 - cytochrome c oxidase subunit III (RefSeq), at 630,667 to 631,263
_0535
DvMF_0536: DvMF_0536 - cytochrome c oxidase, subunit I (RefSeq), at 631,256 to 632,881
_0536
Position (kb) 629
630
631 Strain fitness (log2 ratio) -1
0
1 at 628.164 kb on + strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.431 kb on + strand, within DvMF_0532 at 628.566 kb on - strand, within DvMF_0532 at 628.567 kb on + strand, within DvMF_0532 at 628.749 kb on - strand, within DvMF_0532 at 628.913 kb on + strand, within DvMF_0532 at 628.913 kb on + strand, within DvMF_0532 at 629.186 kb on + strand at 629.209 kb on - strand at 629.222 kb on + strand at 629.648 kb on + strand, within DvMF_0533 at 630.123 kb on + strand, within DvMF_0533 at 630.444 kb on + strand, within DvMF_0534 at 630.590 kb on - strand, within DvMF_0534 at 630.596 kb on + strand, within DvMF_0534 at 630.730 kb on - strand, within DvMF_0535 at 630.815 kb on - strand, within DvMF_0535 at 630.828 kb on + strand, within DvMF_0535 at 631.174 kb on - strand, within DvMF_0535 at 631.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM Lactate (C) remove 628,164 + DvMF_0532 0.13 -0.1 628,396 - DvMF_0532 0.35 +1.5 628,396 - DvMF_0532 0.35 +0.1 628,431 + DvMF_0532 0.39 +0.3 628,566 - DvMF_0532 0.51 +0.3 628,567 + DvMF_0532 0.52 +0.3 628,749 - DvMF_0532 0.69 +0.7 628,913 + DvMF_0532 0.85 +0.4 628,913 + DvMF_0532 0.85 +0.7 629,186 + +0.7 629,209 - -0.0 629,222 + +0.8 629,648 + DvMF_0533 0.41 +0.3 630,123 + DvMF_0533 0.80 -0.7 630,444 + DvMF_0534 0.26 -0.2 630,590 - DvMF_0534 0.77 +0.7 630,596 + DvMF_0534 0.79 +0.5 630,730 - DvMF_0535 0.11 +0.0 630,815 - DvMF_0535 0.25 +0.4 630,828 + DvMF_0535 0.27 +0.4 631,174 - DvMF_0535 0.85 +0.2 631,353 - +0.7
Or see this region's nucleotide sequence