Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0449

Experiment: 20 mM Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0448 and DvMF_0449 are separated by 232 nucleotidesDvMF_0449 and DvMF_0450 are separated by 278 nucleotides DvMF_0448: DvMF_0448 - molybdopterin oxidoreductase (RefSeq), at 523,352 to 525,337 _0448 DvMF_0449: DvMF_0449 - NAD+ synthetase (RefSeq), at 525,570 to 527,240 _0449 DvMF_0450: DvMF_0450 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (from data), at 527,519 to 528,298 _0450 Position (kb) 525 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1at 524.611 kb on - strand, within DvMF_0448at 524.611 kb on - strand, within DvMF_0448at 524.763 kb on - strand, within DvMF_0448at 524.819 kb on - strand, within DvMF_0448at 524.858 kb on - strand, within DvMF_0448at 524.912 kb on + strand, within DvMF_0448at 525.014 kb on + strand, within DvMF_0448at 525.178 kb on + strandat 525.187 kb on - strandat 525.545 kb on - strandat 527.653 kb on + strand, within DvMF_0450at 527.781 kb on - strand, within DvMF_0450at 527.913 kb on + strand, within DvMF_0450at 528.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM Lactate (C)
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524,611 - DvMF_0448 0.63 +1.1
524,611 - DvMF_0448 0.63 +0.5
524,763 - DvMF_0448 0.71 +0.3
524,819 - DvMF_0448 0.74 +0.3
524,858 - DvMF_0448 0.76 +0.3
524,912 + DvMF_0448 0.79 +0.4
525,014 + DvMF_0448 0.84 +0.4
525,178 + +0.5
525,187 - +0.6
525,545 - -0.1
527,653 + DvMF_0450 0.17 -3.4
527,781 - DvMF_0450 0.34 -2.4
527,913 + DvMF_0450 0.51 -1.9
528,225 - -1.4

Or see this region's nucleotide sequence