Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2207

Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2206 and DVU2207 are separated by 51 nucleotidesDVU2207 and DVU2208 overlap by 73 nucleotidesDVU2208 and tRNA-Gly are separated by 111 nucleotidestRNA-Gly and DVU2209 are separated by 259 nucleotides DVU2206: DVU2206 - conserved hypothetical protein (TIGR), at 2,302,938 to 2,303,609 DVU2206 DVU2207: DVU2207 - hypothetical protein (TIGR), at 2,303,661 to 2,303,834 DVU2207 DVU2208: DVU2208 - hypothetical protein (TIGR), at 2,303,762 to 2,303,875 DVU2208 DVU_tRNA-Gly-4: tRNA-Gly - tRNA with anticodon GCC for Gly (VIMSS-AUTO), at 2,303,987 to 2,304,061 tRNA-Gly DVU2209: DVU2209 - conserved hypothetical protein (TIGR), at 2,304,321 to 2,305,043 DVU2209 Position (kb) 2303 2304Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2302.773 kb on - strandat 2303.107 kb on + strand, within DVU2206at 2303.183 kb on + strand, within DVU2206at 2303.236 kb on + strand, within DVU2206at 2303.242 kb on - strand, within DVU2206at 2303.297 kb on + strand, within DVU2206at 2303.356 kb on - strand, within DVU2206at 2303.364 kb on + strand, within DVU2206at 2303.382 kb on + strand, within DVU2206at 2303.443 kb on + strand, within DVU2206at 2303.443 kb on - strand, within DVU2206at 2303.714 kb on - strand, within DVU2207at 2303.782 kb on + strandat 2303.906 kb on - strandat 2303.910 kb on + strandat 2303.946 kb on + strandat 2303.976 kb on + strandat 2304.157 kb on - strandat 2304.159 kb on + strandat 2304.167 kb on - strandat 2304.203 kb on + strandat 2304.203 kb on + strandat 2304.326 kb on + strandat 2304.328 kb on + strandat 2304.400 kb on + strand, within DVU2209at 2304.423 kb on - strand, within DVU2209at 2304.449 kb on + strand, within DVU2209at 2304.584 kb on + strand, within DVU2209at 2304.592 kb on - strand, within DVU2209at 2304.790 kb on + strand, within DVU2209

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal
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2,302,773 - +1.0
2,303,107 + DVU2206 0.25 -0.4
2,303,183 + DVU2206 0.36 +0.7
2,303,236 + DVU2206 0.44 +1.8
2,303,242 - DVU2206 0.45 +2.6
2,303,297 + DVU2206 0.53 -0.6
2,303,356 - DVU2206 0.62 +1.8
2,303,364 + DVU2206 0.63 +1.7
2,303,382 + DVU2206 0.66 +1.4
2,303,443 + DVU2206 0.75 +1.7
2,303,443 - DVU2206 0.75 +2.0
2,303,714 - DVU2207 0.30 -3.3
2,303,782 + +0.0
2,303,906 - +1.0
2,303,910 + -0.6
2,303,946 + -0.6
2,303,976 + +0.4
2,304,157 - +0.4
2,304,159 + -0.7
2,304,167 - +0.7
2,304,203 + -0.4
2,304,203 + +0.5
2,304,326 + -0.4
2,304,328 + -0.8
2,304,400 + DVU2209 0.11 +0.4
2,304,423 - DVU2209 0.14 -0.3
2,304,449 + DVU2209 0.18 -0.8
2,304,584 + DVU2209 0.36 -0.2
2,304,592 - DVU2209 0.37 -0.0
2,304,790 + DVU2209 0.65 -0.5

Or see this region's nucleotide sequence