Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2206 and DVU2207 are separated by 51 nucleotides DVU2207 and DVU2208 overlap by 73 nucleotides DVU2208 and tRNA-Gly are separated by 111 nucleotides tRNA-Gly and DVU2209 are separated by 259 nucleotides
DVU2206: DVU2206 - conserved hypothetical protein (TIGR), at 2,302,938 to 2,303,609
DVU2206
DVU2207: DVU2207 - hypothetical protein (TIGR), at 2,303,661 to 2,303,834
DVU2207
DVU2208: DVU2208 - hypothetical protein (TIGR), at 2,303,762 to 2,303,875
DVU2208
DVU_tRNA-Gly-4: tRNA-Gly - tRNA with anticodon GCC for Gly (VIMSS-AUTO), at 2,303,987 to 2,304,061
tRNA-Gly
DVU2209: DVU2209 - conserved hypothetical protein (TIGR), at 2,304,321 to 2,305,043
DVU2209
Position (kb)
2303
2304 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2302.773 kb on - strand at 2303.107 kb on + strand, within DVU2206 at 2303.183 kb on + strand, within DVU2206 at 2303.236 kb on + strand, within DVU2206 at 2303.242 kb on - strand, within DVU2206 at 2303.297 kb on + strand, within DVU2206 at 2303.356 kb on - strand, within DVU2206 at 2303.364 kb on + strand, within DVU2206 at 2303.382 kb on + strand, within DVU2206 at 2303.443 kb on + strand, within DVU2206 at 2303.443 kb on - strand, within DVU2206 at 2303.714 kb on - strand, within DVU2207 at 2303.782 kb on + strand at 2303.906 kb on - strand at 2303.910 kb on + strand at 2303.946 kb on + strand at 2303.976 kb on + strand at 2304.157 kb on - strand at 2304.159 kb on + strand at 2304.167 kb on - strand at 2304.203 kb on + strand at 2304.203 kb on + strand at 2304.326 kb on + strand at 2304.328 kb on + strand at 2304.400 kb on + strand, within DVU2209 at 2304.423 kb on - strand, within DVU2209 at 2304.449 kb on + strand, within DVU2209 at 2304.584 kb on + strand, within DVU2209 at 2304.592 kb on - strand, within DVU2209 at 2304.790 kb on + strand, within DVU2209
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 2,302,773 - +1.0 2,303,107 + DVU2206 0.25 -0.4 2,303,183 + DVU2206 0.36 +0.7 2,303,236 + DVU2206 0.44 +1.8 2,303,242 - DVU2206 0.45 +2.6 2,303,297 + DVU2206 0.53 -0.6 2,303,356 - DVU2206 0.62 +1.8 2,303,364 + DVU2206 0.63 +1.7 2,303,382 + DVU2206 0.66 +1.4 2,303,443 + DVU2206 0.75 +1.7 2,303,443 - DVU2206 0.75 +2.0 2,303,714 - DVU2207 0.30 -3.3 2,303,782 + +0.0 2,303,906 - +1.0 2,303,910 + -0.6 2,303,946 + -0.6 2,303,976 + +0.4 2,304,157 - +0.4 2,304,159 + -0.7 2,304,167 - +0.7 2,304,203 + -0.4 2,304,203 + +0.5 2,304,326 + -0.4 2,304,328 + -0.8 2,304,400 + DVU2209 0.11 +0.4 2,304,423 - DVU2209 0.14 -0.3 2,304,449 + DVU2209 0.18 -0.8 2,304,584 + DVU2209 0.36 -0.2 2,304,592 - DVU2209 0.37 -0.0 2,304,790 + DVU2209 0.65 -0.5
Or see this region's nucleotide sequence