Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0582 and DVU0583 overlap by 4 nucleotides DVU0583 and DVU0584 are separated by 131 nucleotides
DVU0582: DVU0582 - sensory box histidine kinase (TIGR), at 645,923 to 647,941
DVU0582
DVU0583: DVU0583 - lipoprotein, putative (TIGR), at 647,938 to 649,209
DVU0583
DVU0584: DVU0584 - transposase, putative (TIGR), at 649,341 to 650,213
DVU0584
Position (kb) 647
648
649
650 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 646.970 kb on - strand, within DVU0582 at 647.009 kb on + strand, within DVU0582 at 647.009 kb on + strand, within DVU0582 at 647.017 kb on - strand, within DVU0582 at 647.164 kb on + strand, within DVU0582 at 647.210 kb on + strand, within DVU0582 at 647.286 kb on + strand, within DVU0582 at 647.301 kb on + strand, within DVU0582 at 647.321 kb on - strand, within DVU0582 at 647.335 kb on + strand, within DVU0582 at 647.338 kb on - strand, within DVU0582 at 647.397 kb on + strand, within DVU0582 at 647.484 kb on + strand, within DVU0582 at 647.497 kb on - strand, within DVU0582 at 647.497 kb on - strand, within DVU0582 at 647.551 kb on + strand, within DVU0582 at 647.600 kb on - strand, within DVU0582 at 647.614 kb on - strand, within DVU0582 at 647.624 kb on + strand, within DVU0582 at 647.630 kb on + strand, within DVU0582 at 647.649 kb on + strand, within DVU0582 at 647.798 kb on + strand at 647.886 kb on - strand at 648.046 kb on + strand at 648.051 kb on + strand at 648.084 kb on - strand, within DVU0583 at 648.084 kb on - strand, within DVU0583 at 648.084 kb on - strand, within DVU0583 at 648.084 kb on - strand, within DVU0583 at 648.204 kb on - strand, within DVU0583 at 648.204 kb on - strand, within DVU0583 at 648.259 kb on + strand, within DVU0583 at 648.354 kb on - strand, within DVU0583 at 648.453 kb on + strand, within DVU0583 at 648.453 kb on + strand, within DVU0583 at 648.461 kb on - strand, within DVU0583 at 648.523 kb on - strand, within DVU0583 at 648.588 kb on + strand, within DVU0583 at 648.850 kb on + strand, within DVU0583 at 648.858 kb on + strand, within DVU0583 at 648.859 kb on - strand, within DVU0583 at 648.907 kb on + strand, within DVU0583 at 648.946 kb on + strand, within DVU0583 at 648.974 kb on + strand, within DVU0583 at 649.078 kb on + strand, within DVU0583 at 649.098 kb on + strand at 649.101 kb on - strand at 649.113 kb on + strand at 649.169 kb on + strand at 649.177 kb on - strand at 649.192 kb on - strand at 649.204 kb on + strand at 649.204 kb on + strand at 649.212 kb on - strand at 649.247 kb on + strand at 649.247 kb on + strand at 649.247 kb on + strand at 649.269 kb on + strand at 649.367 kb on - strand at 649.499 kb on + strand, within DVU0584 at 649.509 kb on + strand, within DVU0584 at 649.539 kb on - strand, within DVU0584 at 649.629 kb on - strand, within DVU0584 at 649.713 kb on + strand, within DVU0584 at 649.725 kb on + strand, within DVU0584 at 649.733 kb on - strand, within DVU0584 at 649.738 kb on + strand, within DVU0584 at 649.746 kb on - strand, within DVU0584 at 649.786 kb on + strand, within DVU0584 at 649.799 kb on - strand, within DVU0584 at 649.829 kb on - strand, within DVU0584 at 649.893 kb on - strand, within DVU0584 at 649.935 kb on - strand, within DVU0584 at 649.951 kb on + strand, within DVU0584 at 649.951 kb on - strand, within DVU0584 at 649.993 kb on + strand, within DVU0584 at 650.069 kb on + strand, within DVU0584 at 650.077 kb on - strand, within DVU0584
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 646,970 - DVU0582 0.52 +2.9 647,009 + DVU0582 0.54 +1.9 647,009 + DVU0582 0.54 -0.7 647,017 - DVU0582 0.54 -2.3 647,164 + DVU0582 0.61 +0.9 647,210 + DVU0582 0.64 -1.2 647,286 + DVU0582 0.68 -0.4 647,301 + DVU0582 0.68 +0.4 647,321 - DVU0582 0.69 +0.1 647,335 + DVU0582 0.70 -0.4 647,338 - DVU0582 0.70 -0.5 647,397 + DVU0582 0.73 +0.1 647,484 + DVU0582 0.77 -1.1 647,497 - DVU0582 0.78 -0.2 647,497 - DVU0582 0.78 -0.3 647,551 + DVU0582 0.81 -2.2 647,600 - DVU0582 0.83 -0.4 647,614 - DVU0582 0.84 -0.4 647,624 + DVU0582 0.84 -0.5 647,630 + DVU0582 0.85 +0.1 647,649 + DVU0582 0.85 -1.2 647,798 + -0.3 647,886 - -0.5 648,046 + -0.7 648,051 + -1.4 648,084 - DVU0583 0.11 -0.7 648,084 - DVU0583 0.11 -0.6 648,084 - DVU0583 0.11 -2.1 648,084 - DVU0583 0.11 -0.9 648,204 - DVU0583 0.21 -0.3 648,204 - DVU0583 0.21 -0.9 648,259 + DVU0583 0.25 -0.1 648,354 - DVU0583 0.33 -0.6 648,453 + DVU0583 0.40 -1.0 648,453 + DVU0583 0.40 +0.1 648,461 - DVU0583 0.41 +0.3 648,523 - DVU0583 0.46 -2.1 648,588 + DVU0583 0.51 +0.9 648,850 + DVU0583 0.72 -0.7 648,858 + DVU0583 0.72 +0.9 648,859 - DVU0583 0.72 -0.8 648,907 + DVU0583 0.76 -0.2 648,946 + DVU0583 0.79 -0.9 648,974 + DVU0583 0.81 -1.2 649,078 + DVU0583 0.90 -2.2 649,098 + +0.9 649,101 - -0.3 649,113 + +0.6 649,169 + -0.8 649,177 - -0.6 649,192 - -0.3 649,204 + -0.8 649,204 + +1.6 649,212 - -0.5 649,247 + +0.1 649,247 + +0.0 649,247 + -2.1 649,269 + +0.3 649,367 - -0.3 649,499 + DVU0584 0.18 +0.1 649,509 + DVU0584 0.19 +0.5 649,539 - DVU0584 0.23 -0.7 649,629 - DVU0584 0.33 -0.6 649,713 + DVU0584 0.43 -1.0 649,725 + DVU0584 0.44 -0.6 649,733 - DVU0584 0.45 +0.3 649,738 + DVU0584 0.45 -0.8 649,746 - DVU0584 0.46 +0.9 649,786 + DVU0584 0.51 +0.5 649,799 - DVU0584 0.52 +0.2 649,829 - DVU0584 0.56 +0.9 649,893 - DVU0584 0.63 -0.5 649,935 - DVU0584 0.68 -0.1 649,951 + DVU0584 0.70 -0.4 649,951 - DVU0584 0.70 +1.2 649,993 + DVU0584 0.75 -0.1 650,069 + DVU0584 0.83 +0.8 650,077 - DVU0584 0.84 -0.1
Or see this region's nucleotide sequence