Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0495 and polA are separated by 192 nucleotides polA and DVU0497 are separated by 106 nucleotides DVU0497 and DVU0498 are separated by 78 nucleotides
DVU0495: DVU0495 - conserved hypothetical protein (TIGR), at 563,891 to 565,087
DVU0495
DVU0496: polA - DNA polymerase I (TIGR), at 565,280 to 568,327
polA
DVU0497: DVU0497 - hypothetical protein (TIGR), at 568,434 to 568,682
DVU0497
DVU0498: DVU0498 - iron-sulfur cluster-binding protein, putative (TIGR), at 568,761 to 570,266
DVU0498
Position (kb) 565
566
567
568
569 Strain fitness (log2 ratio) -2
-1
0
1 at 564.307 kb on - strand, within DVU0495 at 564.307 kb on - strand, within DVU0495 at 564.414 kb on + strand, within DVU0495 at 564.414 kb on + strand, within DVU0495 at 564.491 kb on + strand, within DVU0495 at 564.539 kb on + strand, within DVU0495 at 564.649 kb on + strand, within DVU0495 at 564.796 kb on - strand, within DVU0495 at 564.796 kb on - strand, within DVU0495 at 564.805 kb on + strand, within DVU0495 at 564.809 kb on + strand, within DVU0495 at 564.887 kb on + strand, within DVU0495 at 564.895 kb on - strand, within DVU0495 at 564.979 kb on - strand at 565.015 kb on + strand at 565.149 kb on - strand at 565.260 kb on + strand at 565.260 kb on + strand at 565.293 kb on + strand at 565.293 kb on + strand at 565.301 kb on - strand at 565.301 kb on - strand at 565.301 kb on - strand at 565.365 kb on - strand at 565.891 kb on - strand, within polA at 566.098 kb on - strand, within polA at 566.293 kb on - strand, within polA at 566.493 kb on - strand, within polA at 568.409 kb on - strand at 568.419 kb on - strand at 568.487 kb on - strand, within DVU0497 at 568.493 kb on - strand, within DVU0497 at 568.550 kb on - strand, within DVU0497 at 568.614 kb on + strand, within DVU0497 at 568.615 kb on + strand, within DVU0497 at 568.622 kb on + strand, within DVU0497 at 568.622 kb on - strand, within DVU0497 at 568.656 kb on - strand, within DVU0497 at 568.663 kb on + strand at 568.671 kb on - strand at 568.721 kb on + strand at 568.774 kb on - strand at 568.790 kb on + strand at 568.877 kb on + strand at 568.885 kb on - strand at 568.928 kb on + strand, within DVU0498 at 568.935 kb on + strand, within DVU0498 at 568.943 kb on + strand, within DVU0498 at 569.006 kb on + strand, within DVU0498 at 569.025 kb on - strand, within DVU0498 at 569.036 kb on + strand, within DVU0498 at 569.051 kb on - strand, within DVU0498 at 569.206 kb on + strand, within DVU0498 at 569.233 kb on - strand, within DVU0498 at 569.241 kb on + strand, within DVU0498 at 569.249 kb on - strand, within DVU0498 at 569.297 kb on - strand, within DVU0498
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 564,307 - DVU0495 0.35 -0.1 564,307 - DVU0495 0.35 +0.9 564,414 + DVU0495 0.44 -0.2 564,414 + DVU0495 0.44 +0.9 564,491 + DVU0495 0.50 -1.1 564,539 + DVU0495 0.54 -1.7 564,649 + DVU0495 0.63 +1.3 564,796 - DVU0495 0.76 -1.1 564,796 - DVU0495 0.76 +0.3 564,805 + DVU0495 0.76 +0.3 564,809 + DVU0495 0.77 -1.3 564,887 + DVU0495 0.83 +0.3 564,895 - DVU0495 0.84 +0.2 564,979 - -0.7 565,015 + +0.9 565,149 - -1.0 565,260 + +0.0 565,260 + -0.9 565,293 + -1.4 565,293 + +0.9 565,301 - +0.9 565,301 - -0.9 565,301 - +0.7 565,365 - -0.1 565,891 - polA DVU0496 0.20 -0.1 566,098 - polA DVU0496 0.27 -0.7 566,293 - polA DVU0496 0.33 -1.7 566,493 - polA DVU0496 0.40 -0.6 568,409 - -0.1 568,419 - -2.4 568,487 - DVU0497 0.21 -0.1 568,493 - DVU0497 0.24 +0.8 568,550 - DVU0497 0.47 -0.4 568,614 + DVU0497 0.72 -0.6 568,615 + DVU0497 0.73 +0.3 568,622 + DVU0497 0.76 -1.4 568,622 - DVU0497 0.76 -0.1 568,656 - DVU0497 0.89 -0.4 568,663 + -0.2 568,671 - -0.1 568,721 + -0.1 568,774 - -0.1 568,790 + +0.2 568,877 + +0.9 568,885 - -0.3 568,928 + DVU0498 0.11 +0.5 568,935 + DVU0498 0.12 -0.8 568,943 + DVU0498 0.12 +0.0 569,006 + DVU0498 0.16 -0.2 569,025 - DVU0498 0.18 -0.1 569,036 + DVU0498 0.18 -0.7 569,051 - DVU0498 0.19 -0.3 569,206 + DVU0498 0.30 +0.1 569,233 - DVU0498 0.31 +0.1 569,241 + DVU0498 0.32 +0.9 569,249 - DVU0498 0.32 +0.6 569,297 - DVU0498 0.36 +0.9
Or see this region's nucleotide sequence