Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0491 and argC are separated by 235 nucleotides argC and DVU0493 are separated by 9 nucleotides DVU0493 and DVU0494 are separated by 65 nucleotides
DVU0491: DVU0491 - HDIG domain protein (TIGR), at 559,822 to 561,027
DVU0491
DVU0492: argC - N-acetyl-gamma-glutamyl-phosphate reductase (TIGR), at 561,263 to 562,327
argC
DVU0493: DVU0493 - hypothetical protein (TIGR), at 562,337 to 562,645
DVU0493
DVU0494: DVU0494 - aminotransferase, class V (TIGR), at 562,711 to 563,880
DVU0494
Position (kb) 561
562
563 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 560.288 kb on + strand, within DVU0491 at 560.302 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.309 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.353 kb on + strand, within DVU0491 at 560.473 kb on - strand, within DVU0491 at 560.514 kb on - strand, within DVU0491 at 560.574 kb on + strand, within DVU0491 at 560.870 kb on - strand, within DVU0491 at 560.992 kb on + strand at 561.091 kb on + strand at 561.105 kb on - strand at 561.123 kb on - strand at 561.204 kb on - strand at 561.227 kb on + strand at 561.275 kb on - strand at 561.275 kb on - strand at 561.285 kb on - strand at 561.329 kb on + strand at 561.521 kb on - strand, within argC at 561.582 kb on - strand, within argC at 561.700 kb on + strand, within argC at 561.708 kb on - strand, within argC at 561.709 kb on - strand, within argC at 561.719 kb on + strand, within argC at 561.727 kb on - strand, within argC at 561.737 kb on - strand, within argC at 561.830 kb on - strand, within argC at 561.832 kb on - strand, within argC at 561.841 kb on + strand, within argC at 561.858 kb on - strand, within argC at 561.885 kb on + strand, within argC at 561.944 kb on - strand, within argC at 561.959 kb on + strand, within argC at 562.163 kb on + strand, within argC at 562.182 kb on + strand, within argC at 562.190 kb on - strand, within argC at 562.324 kb on + strand at 562.379 kb on - strand, within DVU0493 at 562.425 kb on + strand, within DVU0493 at 562.475 kb on - strand, within DVU0493 at 562.625 kb on + strand at 562.641 kb on + strand at 562.655 kb on + strand at 562.700 kb on + strand at 562.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 560,288 + DVU0491 0.39 +0.0 560,302 + DVU0491 0.40 -1.1 560,303 + DVU0491 0.40 +0.9 560,303 + DVU0491 0.40 +1.9 560,303 + DVU0491 0.40 +0.4 560,309 - DVU0491 0.40 +0.7 560,311 - DVU0491 0.41 -0.2 560,311 - DVU0491 0.41 -0.2 560,311 - DVU0491 0.41 +0.7 560,353 + DVU0491 0.44 +0.1 560,473 - DVU0491 0.54 +0.3 560,514 - DVU0491 0.57 -0.6 560,574 + DVU0491 0.62 +0.9 560,870 - DVU0491 0.87 -0.5 560,992 + -0.1 561,091 + -0.5 561,105 - -1.1 561,123 - -0.3 561,204 - -0.1 561,227 + -0.6 561,275 - +0.9 561,275 - -2.9 561,285 - -0.5 561,329 + -0.1 561,521 - argC DVU0492 0.24 -2.5 561,582 - argC DVU0492 0.30 -1.4 561,700 + argC DVU0492 0.41 -2.7 561,708 - argC DVU0492 0.42 -3.4 561,709 - argC DVU0492 0.42 -1.6 561,719 + argC DVU0492 0.43 -1.1 561,727 - argC DVU0492 0.44 -2.1 561,737 - argC DVU0492 0.45 -2.7 561,830 - argC DVU0492 0.53 -3.3 561,832 - argC DVU0492 0.53 -3.1 561,841 + argC DVU0492 0.54 -1.6 561,858 - argC DVU0492 0.56 -2.9 561,885 + argC DVU0492 0.58 -2.9 561,944 - argC DVU0492 0.64 -1.9 561,959 + argC DVU0492 0.65 -0.9 562,163 + argC DVU0492 0.85 -4.0 562,182 + argC DVU0492 0.86 -1.4 562,190 - argC DVU0492 0.87 -4.0 562,324 + -0.1 562,379 - DVU0493 0.14 +0.9 562,425 + DVU0493 0.28 +0.9 562,475 - DVU0493 0.45 -0.0 562,625 + -1.6 562,641 + -0.1 562,655 + -0.4 562,700 + +1.2 562,708 - -0.4
Or see this region's nucleotide sequence