Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trpE and trpG overlap by 20 nucleotides trpG and trpD overlap by 4 nucleotides trpD and trpC overlap by 8 nucleotides trpC and trpF-1 are separated by 47 nucleotides
DVU0465: trpE - anthranilate synthase, component I (TIGR), at 532,853 to 534,451
trpE
DVU0466: trpG - anthranilate synthase, glutamine amidotransferase component (TIGR), at 534,432 to 535,061
trpG
DVU0467: trpD - anthranilate phosphoribosyltransferase (TIGR), at 535,058 to 536,056
trpD
DVU0468: trpC - indole-3-glycerol phosphate synthase (TIGR), at 536,049 to 536,822
trpC
DVU0469: trpF-1 - N-(5-phosphoribosyl)anthranilate isomerase (TIGR), at 536,870 to 537,724
trpF-1
Position (kb) 535
536
537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 534.073 kb on + strand, within trpE at 534.090 kb on + strand, within trpE at 534.098 kb on - strand, within trpE at 534.107 kb on + strand, within trpE at 534.149 kb on + strand, within trpE at 534.180 kb on - strand, within trpE at 534.256 kb on - strand, within trpE at 534.322 kb on - strand at 534.382 kb on + strand at 534.418 kb on + strand at 534.466 kb on + strand at 534.490 kb on - strand at 534.500 kb on - strand, within trpG at 534.501 kb on - strand, within trpG at 534.501 kb on - strand, within trpG at 534.563 kb on + strand, within trpG at 534.596 kb on - strand, within trpG at 534.717 kb on - strand, within trpG at 534.766 kb on + strand, within trpG at 534.796 kb on + strand, within trpG at 534.807 kb on + strand, within trpG at 534.895 kb on - strand, within trpG at 534.905 kb on + strand, within trpG at 534.921 kb on - strand, within trpG at 534.935 kb on - strand, within trpG at 535.038 kb on - strand at 535.103 kb on + strand at 535.130 kb on + strand at 535.204 kb on + strand, within trpD at 535.206 kb on - strand, within trpD at 535.229 kb on - strand, within trpD at 535.233 kb on - strand, within trpD at 535.239 kb on + strand, within trpD at 535.244 kb on + strand, within trpD at 535.244 kb on + strand, within trpD at 535.244 kb on + strand, within trpD at 535.244 kb on + strand, within trpD at 535.244 kb on + strand, within trpD at 535.252 kb on - strand, within trpD at 535.252 kb on - strand, within trpD at 535.252 kb on - strand, within trpD at 535.252 kb on - strand, within trpD at 535.257 kb on - strand, within trpD at 535.272 kb on + strand, within trpD at 535.447 kb on - strand, within trpD at 535.508 kb on - strand, within trpD at 535.546 kb on + strand, within trpD at 535.591 kb on - strand, within trpD at 535.634 kb on - strand, within trpD at 535.709 kb on + strand, within trpD at 535.756 kb on - strand, within trpD at 535.839 kb on + strand, within trpD at 535.841 kb on + strand, within trpD at 535.841 kb on + strand, within trpD at 535.849 kb on - strand, within trpD at 535.871 kb on - strand, within trpD at 535.897 kb on + strand, within trpD at 535.905 kb on - strand, within trpD at 535.920 kb on - strand, within trpD at 535.938 kb on + strand, within trpD at 535.942 kb on - strand, within trpD at 535.942 kb on - strand, within trpD at 535.955 kb on + strand, within trpD at 535.955 kb on + strand, within trpD at 535.963 kb on - strand at 535.983 kb on + strand at 535.985 kb on + strand at 535.985 kb on + strand at 535.985 kb on + strand at 536.095 kb on - strand at 536.158 kb on + strand, within trpC at 536.164 kb on - strand, within trpC at 536.166 kb on - strand, within trpC at 536.166 kb on - strand, within trpC at 536.179 kb on + strand, within trpC at 536.179 kb on + strand, within trpC at 536.179 kb on + strand, within trpC at 536.301 kb on - strand, within trpC at 536.303 kb on + strand, within trpC at 536.311 kb on - strand, within trpC at 536.318 kb on + strand, within trpC at 536.318 kb on + strand, within trpC at 536.369 kb on - strand, within trpC at 536.425 kb on + strand, within trpC at 536.461 kb on + strand, within trpC at 536.467 kb on + strand, within trpC at 536.506 kb on - strand, within trpC at 536.511 kb on + strand, within trpC at 536.519 kb on - strand, within trpC at 536.519 kb on - strand, within trpC at 536.547 kb on - strand, within trpC at 536.566 kb on + strand, within trpC at 536.611 kb on + strand, within trpC at 536.619 kb on - strand, within trpC at 536.669 kb on + strand, within trpC at 536.750 kb on - strand at 536.757 kb on + strand at 536.757 kb on + strand at 536.765 kb on - strand at 536.799 kb on + strand at 536.807 kb on - strand at 536.860 kb on + strand at 536.979 kb on + strand, within trpF-1 at 537.037 kb on - strand, within trpF-1 at 537.037 kb on - strand, within trpF-1 at 537.044 kb on - strand, within trpF-1 at 537.044 kb on - strand, within trpF-1
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 534,073 + trpE DVU0465 0.76 +0.5 534,090 + trpE DVU0465 0.77 -1.6 534,098 - trpE DVU0465 0.78 -1.4 534,107 + trpE DVU0465 0.78 -1.8 534,149 + trpE DVU0465 0.81 -1.9 534,180 - trpE DVU0465 0.83 -1.2 534,256 - trpE DVU0465 0.88 -2.5 534,322 - -2.3 534,382 + -0.3 534,418 + +0.4 534,466 + -1.6 534,490 - -0.1 534,500 - trpG DVU0466 0.11 +0.6 534,501 - trpG DVU0466 0.11 -1.6 534,501 - trpG DVU0466 0.11 -1.7 534,563 + trpG DVU0466 0.21 -1.7 534,596 - trpG DVU0466 0.26 -0.9 534,717 - trpG DVU0466 0.45 +0.9 534,766 + trpG DVU0466 0.53 -1.4 534,796 + trpG DVU0466 0.58 -0.6 534,807 + trpG DVU0466 0.60 -0.7 534,895 - trpG DVU0466 0.73 +0.4 534,905 + trpG DVU0466 0.75 +0.9 534,921 - trpG DVU0466 0.78 -0.7 534,935 - trpG DVU0466 0.80 -2.2 535,038 - +0.5 535,103 + -2.0 535,130 + -1.3 535,204 + trpD DVU0467 0.15 -0.5 535,206 - trpD DVU0467 0.15 -0.5 535,229 - trpD DVU0467 0.17 -2.8 535,233 - trpD DVU0467 0.18 -1.2 535,239 + trpD DVU0467 0.18 -2.4 535,244 + trpD DVU0467 0.19 -2.9 535,244 + trpD DVU0467 0.19 -0.4 535,244 + trpD DVU0467 0.19 -2.1 535,244 + trpD DVU0467 0.19 +0.4 535,244 + trpD DVU0467 0.19 -2.6 535,252 - trpD DVU0467 0.19 -1.6 535,252 - trpD DVU0467 0.19 -0.1 535,252 - trpD DVU0467 0.19 -1.4 535,252 - trpD DVU0467 0.19 +0.9 535,257 - trpD DVU0467 0.20 -2.0 535,272 + trpD DVU0467 0.21 -1.8 535,447 - trpD DVU0467 0.39 -2.6 535,508 - trpD DVU0467 0.45 -2.1 535,546 + trpD DVU0467 0.49 -0.3 535,591 - trpD DVU0467 0.53 -2.4 535,634 - trpD DVU0467 0.58 +0.9 535,709 + trpD DVU0467 0.65 -0.4 535,756 - trpD DVU0467 0.70 +0.9 535,839 + trpD DVU0467 0.78 -2.2 535,841 + trpD DVU0467 0.78 -1.3 535,841 + trpD DVU0467 0.78 +0.9 535,849 - trpD DVU0467 0.79 -0.9 535,871 - trpD DVU0467 0.81 -2.4 535,897 + trpD DVU0467 0.84 -1.2 535,905 - trpD DVU0467 0.85 -0.8 535,920 - trpD DVU0467 0.86 -3.5 535,938 + trpD DVU0467 0.88 -1.4 535,942 - trpD DVU0467 0.88 +1.9 535,942 - trpD DVU0467 0.88 -0.1 535,955 + trpD DVU0467 0.90 -1.1 535,955 + trpD DVU0467 0.90 -1.7 535,963 - -2.2 535,983 + -1.4 535,985 + -2.2 535,985 + +0.9 535,985 + -1.9 536,095 - -1.7 536,158 + trpC DVU0468 0.14 -1.6 536,164 - trpC DVU0468 0.15 -1.5 536,166 - trpC DVU0468 0.15 -2.1 536,166 - trpC DVU0468 0.15 -2.3 536,179 + trpC DVU0468 0.17 -3.2 536,179 + trpC DVU0468 0.17 -2.5 536,179 + trpC DVU0468 0.17 -1.8 536,301 - trpC DVU0468 0.33 -1.4 536,303 + trpC DVU0468 0.33 -0.9 536,311 - trpC DVU0468 0.34 -2.2 536,318 + trpC DVU0468 0.35 -2.7 536,318 + trpC DVU0468 0.35 -1.4 536,369 - trpC DVU0468 0.41 -2.5 536,425 + trpC DVU0468 0.49 -3.2 536,461 + trpC DVU0468 0.53 -4.1 536,467 + trpC DVU0468 0.54 -0.1 536,506 - trpC DVU0468 0.59 -1.4 536,511 + trpC DVU0468 0.60 -3.7 536,519 - trpC DVU0468 0.61 -1.4 536,519 - trpC DVU0468 0.61 -2.7 536,547 - trpC DVU0468 0.64 +0.9 536,566 + trpC DVU0468 0.67 -1.4 536,611 + trpC DVU0468 0.73 -2.2 536,619 - trpC DVU0468 0.74 -2.9 536,669 + trpC DVU0468 0.80 -1.6 536,750 - -1.4 536,757 + -2.2 536,757 + -0.1 536,765 - -1.9 536,799 + -1.3 536,807 - -0.8 536,860 + -2.2 536,979 + trpF-1 DVU0469 0.13 -2.9 537,037 - trpF-1 DVU0469 0.20 -0.6 537,037 - trpF-1 DVU0469 0.20 -3.3 537,044 - trpF-1 DVU0469 0.20 -1.5 537,044 - trpF-1 DVU0469 0.20 -2.5
Or see this region's nucleotide sequence