Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlpA and DVU0398 are separated by 80 nucleotides DVU0398 and DVU0399 overlap by 4 nucleotides DVU0399 and DVU0400 are separated by 84 nucleotides
DVU0397: rlpA - rare lipoprotein A, putative (TIGR), at 445,073 to 445,804
rlpA
DVU0398: DVU0398 - HMGL-like domain protein (TIGR), at 445,885 to 447,711
DVU0398
DVU0399: DVU0399 - hypothetical protein (TIGR), at 447,708 to 448,496
DVU0399
DVU0400: DVU0400 - hypothetical protein (TIGR), at 448,581 to 449,132
DVU0400
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 444.980 kb on - strand at 444.985 kb on - strand at 445.134 kb on + strand at 445.168 kb on - strand, within rlpA at 445.270 kb on - strand, within rlpA at 445.290 kb on + strand, within rlpA at 445.290 kb on + strand, within rlpA at 445.300 kb on + strand, within rlpA at 445.308 kb on - strand, within rlpA at 445.377 kb on - strand, within rlpA at 445.389 kb on + strand, within rlpA at 445.397 kb on - strand, within rlpA at 445.492 kb on + strand, within rlpA at 445.497 kb on + strand, within rlpA at 445.515 kb on - strand, within rlpA at 445.572 kb on + strand, within rlpA at 445.619 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.681 kb on + strand, within rlpA at 445.703 kb on + strand, within rlpA at 445.705 kb on - strand, within rlpA at 445.720 kb on + strand, within rlpA at 445.760 kb on - strand at 445.760 kb on - strand at 445.802 kb on - strand at 445.846 kb on + strand at 445.847 kb on - strand at 445.862 kb on + strand at 445.877 kb on + strand at 445.877 kb on + strand at 445.877 kb on + strand at 446.036 kb on - strand at 446.067 kb on + strand at 446.070 kb on - strand, within DVU0398 at 446.367 kb on + strand, within DVU0398 at 447.726 kb on + strand at 447.734 kb on - strand at 447.768 kb on - strand at 447.770 kb on + strand at 447.847 kb on + strand, within DVU0399 at 447.847 kb on + strand, within DVU0399 at 447.910 kb on + strand, within DVU0399 at 447.948 kb on + strand, within DVU0399 at 447.956 kb on - strand, within DVU0399 at 447.978 kb on + strand, within DVU0399 at 448.131 kb on + strand, within DVU0399 at 448.157 kb on - strand, within DVU0399 at 448.167 kb on - strand, within DVU0399 at 448.172 kb on - strand, within DVU0399 at 448.182 kb on - strand, within DVU0399 at 448.182 kb on - strand, within DVU0399 at 448.272 kb on - strand, within DVU0399 at 448.306 kb on + strand, within DVU0399 at 448.352 kb on + strand, within DVU0399 at 448.359 kb on + strand, within DVU0399 at 448.360 kb on - strand, within DVU0399 at 448.420 kb on + strand at 448.476 kb on - strand at 448.486 kb on - strand at 448.542 kb on + strand at 448.577 kb on - strand at 448.682 kb on + strand, within DVU0400 at 448.696 kb on + strand, within DVU0400
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 444,980 - -1.1 444,985 - -0.1 445,134 + -0.5 445,168 - rlpA DVU0397 0.13 -0.9 445,270 - rlpA DVU0397 0.27 -1.2 445,290 + rlpA DVU0397 0.30 -0.3 445,290 + rlpA DVU0397 0.30 +0.9 445,300 + rlpA DVU0397 0.31 -0.9 445,308 - rlpA DVU0397 0.32 -0.9 445,377 - rlpA DVU0397 0.42 -1.8 445,389 + rlpA DVU0397 0.43 -0.7 445,397 - rlpA DVU0397 0.44 -1.1 445,492 + rlpA DVU0397 0.57 -0.4 445,497 + rlpA DVU0397 0.58 -0.3 445,515 - rlpA DVU0397 0.60 -1.2 445,572 + rlpA DVU0397 0.68 +0.9 445,619 + rlpA DVU0397 0.75 -0.1 445,662 + rlpA DVU0397 0.80 -0.8 445,662 + rlpA DVU0397 0.80 -0.7 445,662 + rlpA DVU0397 0.80 -1.6 445,662 + rlpA DVU0397 0.80 -1.9 445,662 + rlpA DVU0397 0.80 -0.1 445,662 + rlpA DVU0397 0.80 -1.3 445,662 + rlpA DVU0397 0.80 +0.3 445,662 + rlpA DVU0397 0.80 -1.1 445,662 + rlpA DVU0397 0.80 -0.8 445,670 - rlpA DVU0397 0.82 -1.4 445,670 - rlpA DVU0397 0.82 -1.2 445,670 - rlpA DVU0397 0.82 -0.1 445,670 - rlpA DVU0397 0.82 +2.5 445,670 - rlpA DVU0397 0.82 -0.4 445,670 - rlpA DVU0397 0.82 +0.3 445,670 - rlpA DVU0397 0.82 -0.8 445,670 - rlpA DVU0397 0.82 +0.9 445,670 - rlpA DVU0397 0.82 -1.1 445,681 + rlpA DVU0397 0.83 -0.3 445,703 + rlpA DVU0397 0.86 -0.2 445,705 - rlpA DVU0397 0.86 +0.8 445,720 + rlpA DVU0397 0.88 -0.7 445,760 - -0.1 445,760 - -2.3 445,802 - -0.3 445,846 + +0.4 445,847 - +0.1 445,862 + -0.7 445,877 + -0.8 445,877 + +0.0 445,877 + -0.1 446,036 - +0.9 446,067 + -1.7 446,070 - DVU0398 0.10 -1.4 446,367 + DVU0398 0.26 -1.4 447,726 + +0.4 447,734 - +0.4 447,768 - -0.1 447,770 + -0.7 447,847 + DVU0399 0.18 -0.4 447,847 + DVU0399 0.18 -1.2 447,910 + DVU0399 0.26 +0.3 447,948 + DVU0399 0.30 -0.8 447,956 - DVU0399 0.31 +0.1 447,978 + DVU0399 0.34 +1.9 448,131 + DVU0399 0.54 +0.9 448,157 - DVU0399 0.57 -0.6 448,167 - DVU0399 0.58 -0.1 448,172 - DVU0399 0.59 +1.9 448,182 - DVU0399 0.60 -0.7 448,182 - DVU0399 0.60 -0.7 448,272 - DVU0399 0.71 -1.6 448,306 + DVU0399 0.76 +0.3 448,352 + DVU0399 0.82 +0.3 448,359 + DVU0399 0.83 +0.2 448,360 - DVU0399 0.83 -1.1 448,420 + -0.7 448,476 - -0.1 448,486 - -0.7 448,542 + -0.1 448,577 - -0.6 448,682 + DVU0400 0.18 -0.7 448,696 + DVU0400 0.21 +0.3
Or see this region's nucleotide sequence