Experiment: Formate/Acetate-Sulfate (60/10-30 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpsC and DVU0353 are separated by 133 nucleotides DVU0353 and DVU0354 are separated by 595 nucleotides
DVU0352: lpsC - aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR), at 399,515 to 400,696
lpsC
DVU0353: DVU0353 - alcohol dehydrogenase, iron-containing (TIGR), at 400,830 to 401,903
DVU0353
DVU0354: DVU0354 - conserved domain protein (TIGR), at 402,499 to 403,404
DVU0354
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.888 kb on - strand, within lpsC at 399.911 kb on - strand, within lpsC at 399.913 kb on + strand, within lpsC at 400.085 kb on - strand, within lpsC at 400.102 kb on - strand, within lpsC at 400.139 kb on - strand, within lpsC at 400.187 kb on - strand, within lpsC at 400.204 kb on - strand, within lpsC at 400.209 kb on + strand, within lpsC at 400.209 kb on + strand, within lpsC at 400.217 kb on - strand, within lpsC at 400.217 kb on - strand, within lpsC at 400.243 kb on + strand, within lpsC at 400.262 kb on + strand, within lpsC at 400.314 kb on - strand, within lpsC at 400.317 kb on + strand, within lpsC at 400.386 kb on - strand, within lpsC at 400.389 kb on + strand, within lpsC at 400.407 kb on - strand, within lpsC at 400.422 kb on + strand, within lpsC at 400.427 kb on + strand, within lpsC at 400.454 kb on + strand, within lpsC at 400.490 kb on - strand, within lpsC at 400.536 kb on - strand, within lpsC at 400.543 kb on - strand, within lpsC at 400.597 kb on + strand at 400.655 kb on + strand at 400.663 kb on - strand at 400.713 kb on - strand at 400.794 kb on - strand at 400.802 kb on - strand at 400.837 kb on + strand at 400.837 kb on + strand at 400.837 kb on + strand at 400.866 kb on + strand at 400.874 kb on - strand at 400.874 kb on - strand at 400.957 kb on + strand, within DVU0353 at 400.969 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.978 kb on + strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.986 kb on - strand, within DVU0353 at 400.988 kb on + strand, within DVU0353 at 400.988 kb on + strand, within DVU0353 at 400.996 kb on - strand, within DVU0353 at 401.002 kb on + strand, within DVU0353 at 401.033 kb on + strand, within DVU0353 at 401.038 kb on + strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.046 kb on - strand, within DVU0353 at 401.084 kb on + strand, within DVU0353 at 401.094 kb on + strand, within DVU0353 at 401.129 kb on - strand, within DVU0353 at 401.130 kb on + strand, within DVU0353 at 401.176 kb on + strand, within DVU0353 at 401.184 kb on - strand, within DVU0353 at 401.184 kb on - strand, within DVU0353 at 401.312 kb on + strand, within DVU0353 at 401.330 kb on - strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.369 kb on + strand, within DVU0353 at 401.372 kb on - strand, within DVU0353 at 401.376 kb on + strand, within DVU0353 at 401.412 kb on + strand, within DVU0353 at 401.421 kb on - strand, within DVU0353 at 401.505 kb on + strand, within DVU0353 at 401.515 kb on + strand, within DVU0353 at 401.540 kb on - strand, within DVU0353 at 401.547 kb on + strand, within DVU0353 at 401.555 kb on - strand, within DVU0353 at 401.571 kb on - strand, within DVU0353 at 401.595 kb on - strand, within DVU0353 at 401.598 kb on + strand, within DVU0353 at 401.606 kb on - strand, within DVU0353 at 401.635 kb on - strand, within DVU0353 at 401.700 kb on - strand, within DVU0353 at 401.700 kb on - strand, within DVU0353 at 401.754 kb on + strand, within DVU0353 at 401.801 kb on - strand at 401.912 kb on + strand at 401.912 kb on + strand at 401.985 kb on - strand at 402.102 kb on - strand at 402.103 kb on + strand at 402.131 kb on + strand at 402.149 kb on + strand at 402.193 kb on - strand at 402.216 kb on - strand at 402.220 kb on + strand at 402.265 kb on - strand at 402.299 kb on - strand at 402.334 kb on + strand at 402.342 kb on - strand at 402.392 kb on + strand at 402.392 kb on + strand at 402.397 kb on + strand at 402.400 kb on - strand at 402.451 kb on + strand at 402.509 kb on - strand at 402.557 kb on - strand at 402.574 kb on + strand at 402.621 kb on - strand, within DVU0354 at 402.628 kb on + strand, within DVU0354 at 402.633 kb on + strand, within DVU0354 at 402.638 kb on + strand, within DVU0354 at 402.643 kb on + strand, within DVU0354 at 402.645 kb on + strand, within DVU0354 at 402.646 kb on - strand, within DVU0354 at 402.646 kb on - strand, within DVU0354 at 402.651 kb on - strand, within DVU0354 at 402.677 kb on + strand, within DVU0354 at 402.683 kb on + strand, within DVU0354 at 402.685 kb on + strand, within DVU0354 at 402.685 kb on - strand, within DVU0354 at 402.817 kb on + strand, within DVU0354 at 402.832 kb on + strand, within DVU0354 at 402.837 kb on - strand, within DVU0354 at 402.857 kb on + strand, within DVU0354 at 402.882 kb on + strand, within DVU0354 at 402.891 kb on - strand, within DVU0354 at 402.903 kb on + strand, within DVU0354 at 402.903 kb on + strand, within DVU0354
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/10-30 mM) minimal remove 399,888 - lpsC DVU0352 0.32 -0.5 399,911 - lpsC DVU0352 0.34 -1.1 399,913 + lpsC DVU0352 0.34 +0.2 400,085 - lpsC DVU0352 0.48 -0.5 400,102 - lpsC DVU0352 0.50 -0.2 400,139 - lpsC DVU0352 0.53 -0.7 400,187 - lpsC DVU0352 0.57 -0.1 400,204 - lpsC DVU0352 0.58 -2.3 400,209 + lpsC DVU0352 0.59 -1.0 400,209 + lpsC DVU0352 0.59 -0.1 400,217 - lpsC DVU0352 0.59 -1.6 400,217 - lpsC DVU0352 0.59 -1.3 400,243 + lpsC DVU0352 0.62 +0.9 400,262 + lpsC DVU0352 0.63 -0.7 400,314 - lpsC DVU0352 0.68 -0.7 400,317 + lpsC DVU0352 0.68 -1.2 400,386 - lpsC DVU0352 0.74 -1.7 400,389 + lpsC DVU0352 0.74 +0.3 400,407 - lpsC DVU0352 0.75 +1.3 400,422 + lpsC DVU0352 0.77 -0.3 400,427 + lpsC DVU0352 0.77 -1.0 400,454 + lpsC DVU0352 0.79 -1.0 400,490 - lpsC DVU0352 0.82 -0.5 400,536 - lpsC DVU0352 0.86 -1.9 400,543 - lpsC DVU0352 0.87 -0.3 400,597 + -0.8 400,655 + -1.1 400,663 - -0.5 400,713 - -0.2 400,794 - +0.5 400,802 - -0.1 400,837 + -0.6 400,837 + -0.8 400,837 + -2.5 400,866 + -0.4 400,874 - -0.7 400,874 - -0.1 400,957 + DVU0353 0.12 -0.8 400,969 + DVU0353 0.13 -0.4 400,978 + DVU0353 0.14 -1.4 400,978 + DVU0353 0.14 -1.4 400,978 + DVU0353 0.14 -1.0 400,978 + DVU0353 0.14 -2.4 400,978 + DVU0353 0.14 -1.4 400,978 + DVU0353 0.14 +0.1 400,978 + DVU0353 0.14 -0.3 400,978 + DVU0353 0.14 -0.9 400,978 + DVU0353 0.14 -1.1 400,978 + DVU0353 0.14 -3.2 400,978 + DVU0353 0.14 -0.5 400,986 - DVU0353 0.15 -2.4 400,986 - DVU0353 0.15 -1.4 400,986 - DVU0353 0.15 -0.2 400,986 - DVU0353 0.15 -0.4 400,986 - DVU0353 0.15 -0.4 400,986 - DVU0353 0.15 -0.9 400,986 - DVU0353 0.15 +0.6 400,986 - DVU0353 0.15 -0.7 400,986 - DVU0353 0.15 +0.9 400,988 + DVU0353 0.15 -1.9 400,988 + DVU0353 0.15 -1.7 400,996 - DVU0353 0.15 +0.0 401,002 + DVU0353 0.16 -1.9 401,033 + DVU0353 0.19 -0.7 401,038 + DVU0353 0.19 -0.6 401,046 - DVU0353 0.20 -1.0 401,046 - DVU0353 0.20 +1.1 401,046 - DVU0353 0.20 -1.7 401,084 + DVU0353 0.24 -1.0 401,094 + DVU0353 0.25 -0.9 401,129 - DVU0353 0.28 -1.0 401,130 + DVU0353 0.28 -1.1 401,176 + DVU0353 0.32 -1.1 401,184 - DVU0353 0.33 -0.5 401,184 - DVU0353 0.33 -0.4 401,312 + DVU0353 0.45 -0.4 401,330 - DVU0353 0.47 -0.9 401,369 + DVU0353 0.50 -0.5 401,369 + DVU0353 0.50 -0.4 401,369 + DVU0353 0.50 +1.5 401,369 + DVU0353 0.50 -0.6 401,372 - DVU0353 0.50 -0.3 401,376 + DVU0353 0.51 +0.6 401,412 + DVU0353 0.54 -1.6 401,421 - DVU0353 0.55 -0.5 401,505 + DVU0353 0.63 +0.1 401,515 + DVU0353 0.64 -0.9 401,540 - DVU0353 0.66 -0.4 401,547 + DVU0353 0.67 -1.7 401,555 - DVU0353 0.68 -1.0 401,571 - DVU0353 0.69 -1.9 401,595 - DVU0353 0.71 -0.5 401,598 + DVU0353 0.72 -0.3 401,606 - DVU0353 0.72 -1.0 401,635 - DVU0353 0.75 +0.9 401,700 - DVU0353 0.81 -0.8 401,700 - DVU0353 0.81 -0.8 401,754 + DVU0353 0.86 -1.2 401,801 - -1.0 401,912 + -0.3 401,912 + +0.9 401,985 - -0.7 402,102 - +0.9 402,103 + +0.3 402,131 + +2.5 402,149 + +0.6 402,193 - -1.1 402,216 - -0.1 402,220 + -0.9 402,265 - -0.3 402,299 - -0.5 402,334 + -0.7 402,342 - -0.7 402,392 + +0.0 402,392 + -0.3 402,397 + -0.4 402,400 - -0.1 402,451 + +0.4 402,509 - +0.2 402,557 - -0.4 402,574 + -1.1 402,621 - DVU0354 0.13 -0.1 402,628 + DVU0354 0.14 +0.2 402,633 + DVU0354 0.15 -0.3 402,638 + DVU0354 0.15 -0.4 402,643 + DVU0354 0.16 -0.0 402,645 + DVU0354 0.16 +0.4 402,646 - DVU0354 0.16 -0.6 402,646 - DVU0354 0.16 -1.3 402,651 - DVU0354 0.17 +0.1 402,677 + DVU0354 0.20 +0.6 402,683 + DVU0354 0.20 -0.3 402,685 + DVU0354 0.21 -0.5 402,685 - DVU0354 0.21 +0.2 402,817 + DVU0354 0.35 +0.4 402,832 + DVU0354 0.37 -0.4 402,837 - DVU0354 0.37 +0.9 402,857 + DVU0354 0.40 +1.5 402,882 + DVU0354 0.42 -0.3 402,891 - DVU0354 0.43 +0.9 402,903 + DVU0354 0.45 -0.3 402,903 + DVU0354 0.45 -1.1
Or see this region's nucleotide sequence